Strain Fitness in Xanthobacter sp. DMC5 around GFF3666

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3665 and GFF3666 are separated by 118 nucleotidesGFF3666 and GFF3667 are separated by 6 nucleotidesGFF3667 and GFF3668 are separated by 16 nucleotides GFF3665 - hypothetical protein, at 4,026 to 4,946 GFF3665 GFF3666 - hypothetical protein, at 5,065 to 5,991 GFF3666 GFF3667 - hypothetical protein, at 5,998 to 6,417 GFF3667 GFF3668 - hypothetical protein, at 6,434 to 8,032 GFF3668 Position (kb) 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 4.131 kb on + strand, within GFF3665at 4.131 kb on + strand, within GFF3665at 4.131 kb on + strand, within GFF3665at 4.131 kb on + strand, within GFF3665at 4.132 kb on - strand, within GFF3665at 4.132 kb on - strand, within GFF3665at 4.132 kb on - strand, within GFF3665at 4.132 kb on - strand, within GFF3665at 4.133 kb on + strand, within GFF3665at 4.133 kb on + strand, within GFF3665at 4.133 kb on + strand, within GFF3665at 4.380 kb on + strand, within GFF3665at 4.380 kb on + strand, within GFF3665at 4.380 kb on + strand, within GFF3665at 4.380 kb on + strand, within GFF3665at 4.381 kb on - strand, within GFF3665at 4.381 kb on - strand, within GFF3665at 4.500 kb on + strand, within GFF3665at 4.500 kb on + strand, within GFF3665at 4.500 kb on + strand, within GFF3665at 4.501 kb on - strand, within GFF3665at 4.539 kb on + strand, within GFF3665at 4.540 kb on - strand, within GFF3665at 4.540 kb on - strand, within GFF3665at 4.540 kb on - strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.542 kb on - strand, within GFF3665at 4.542 kb on - strand, within GFF3665at 4.952 kb on + strandat 5.009 kb on + strandat 5.170 kb on + strand, within GFF3666at 5.170 kb on + strand, within GFF3666at 5.170 kb on + strand, within GFF3666at 5.171 kb on - strand, within GFF3666at 5.171 kb on - strand, within GFF3666at 5.171 kb on - strand, within GFF3666at 5.368 kb on + strand, within GFF3666at 5.368 kb on + strand, within GFF3666at 5.545 kb on + strand, within GFF3666at 5.545 kb on + strand, within GFF3666at 5.546 kb on - strand, within GFF3666at 5.546 kb on - strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.584 kb on + strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.585 kb on - strand, within GFF3666at 5.745 kb on + strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.746 kb on - strand, within GFF3666at 5.990 kb on - strandat 5.990 kb on - strandat 6.317 kb on + strand, within GFF3667at 6.317 kb on + strand, within GFF3667at 6.317 kb on + strand, within GFF3667at 6.317 kb on + strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.318 kb on - strand, within GFF3667at 6.674 kb on + strand, within GFF3668at 6.762 kb on - strand, within GFF3668at 6.762 kb on - strand, within GFF3668at 6.768 kb on - strand, within GFF3668at 6.774 kb on + strand, within GFF3668at 6.839 kb on - strand, within GFF3668at 6.846 kb on + strand, within GFF3668at 6.846 kb on + strand, within GFF3668at 6.846 kb on + strand, within GFF3668at 6.847 kb on - strand, within GFF3668at 6.847 kb on - strand, within GFF3668at 6.851 kb on - strand, within GFF3668at 6.885 kb on + strand, within GFF3668at 6.886 kb on - strand, within GFF3668at 6.904 kb on + strand, within GFF3668at 6.904 kb on + strand, within GFF3668at 6.950 kb on + strand, within GFF3668at 6.950 kb on + strand, within GFF3668at 6.950 kb on + strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.951 kb on - strand, within GFF3668at 6.953 kb on - strand, within GFF3668

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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4,131 + GFF3665 0.11 +0.1
4,131 + GFF3665 0.11 -0.5
4,131 + GFF3665 0.11 +0.1
4,131 + GFF3665 0.11 -0.6
4,132 - GFF3665 0.12 -0.1
4,132 - GFF3665 0.12 +0.3
4,132 - GFF3665 0.12 +0.1
4,132 - GFF3665 0.12 +0.4
4,133 + GFF3665 0.12 +0.1
4,133 + GFF3665 0.12 -0.3
4,133 + GFF3665 0.12 +1.8
4,380 + GFF3665 0.38 -0.4
4,380 + GFF3665 0.38 +0.8
4,380 + GFF3665 0.38 -0.2
4,380 + GFF3665 0.38 +0.4
4,381 - GFF3665 0.39 +0.7
4,381 - GFF3665 0.39 +0.2
4,500 + GFF3665 0.51 -0.8
4,500 + GFF3665 0.51 -0.6
4,500 + GFF3665 0.51 +0.4
4,501 - GFF3665 0.52 -0.6
4,539 + GFF3665 0.56 +0.4
4,540 - GFF3665 0.56 -0.5
4,540 - GFF3665 0.56 -0.3
4,540 - GFF3665 0.56 -0.2
4,541 + GFF3665 0.56 -0.0
4,541 + GFF3665 0.56 -0.2
4,541 + GFF3665 0.56 -0.8
4,541 + GFF3665 0.56 +0.0
4,541 + GFF3665 0.56 -0.2
4,541 + GFF3665 0.56 +0.6
4,541 + GFF3665 0.56 -0.2
4,542 - GFF3665 0.56 -0.3
4,542 - GFF3665 0.56 +0.6
4,952 + +0.8
5,009 + +0.8
5,170 + GFF3666 0.11 +0.2
5,170 + GFF3666 0.11 +0.6
5,170 + GFF3666 0.11 +0.4
5,171 - GFF3666 0.11 -0.7
5,171 - GFF3666 0.11 +0.1
5,171 - GFF3666 0.11 +0.1
5,368 + GFF3666 0.33 -0.2
5,368 + GFF3666 0.33 -0.1
5,545 + GFF3666 0.52 +1.9
5,545 + GFF3666 0.52 -1.6
5,546 - GFF3666 0.52 +0.2
5,546 - GFF3666 0.52 -0.1
5,584 + GFF3666 0.56 -2.1
5,584 + GFF3666 0.56 -0.2
5,584 + GFF3666 0.56 +0.8
5,584 + GFF3666 0.56 -0.0
5,584 + GFF3666 0.56 +0.3
5,584 + GFF3666 0.56 -0.1
5,585 - GFF3666 0.56 -0.0
5,585 - GFF3666 0.56 -0.7
5,585 - GFF3666 0.56 -0.1
5,585 - GFF3666 0.56 -0.3
5,585 - GFF3666 0.56 -0.4
5,745 + GFF3666 0.73 +0.2
5,746 - GFF3666 0.73 +0.5
5,746 - GFF3666 0.73 +0.5
5,746 - GFF3666 0.73 -0.4
5,746 - GFF3666 0.73 -0.2
5,990 - -0.7
5,990 - +0.1
6,317 + GFF3667 0.76 +0.6
6,317 + GFF3667 0.76 +1.4
6,317 + GFF3667 0.76 +0.6
6,317 + GFF3667 0.76 -0.8
6,318 - GFF3667 0.76 -1.3
6,318 - GFF3667 0.76 +0.6
6,318 - GFF3667 0.76 +0.1
6,318 - GFF3667 0.76 -0.7
6,674 + GFF3668 0.15 +0.4
6,762 - GFF3668 0.21 -0.5
6,762 - GFF3668 0.21 +0.1
6,768 - GFF3668 0.21 +0.5
6,774 + GFF3668 0.21 +0.1
6,839 - GFF3668 0.25 -0.1
6,846 + GFF3668 0.26 -0.3
6,846 + GFF3668 0.26 +1.0
6,846 + GFF3668 0.26 +0.5
6,847 - GFF3668 0.26 -0.5
6,847 - GFF3668 0.26 +0.2
6,851 - GFF3668 0.26 -0.8
6,885 + GFF3668 0.28 -1.2
6,886 - GFF3668 0.28 -0.9
6,904 + GFF3668 0.29 +0.7
6,904 + GFF3668 0.29 +0.0
6,950 + GFF3668 0.32 -0.2
6,950 + GFF3668 0.32 -0.0
6,950 + GFF3668 0.32 -0.7
6,951 - GFF3668 0.32 -0.0
6,951 - GFF3668 0.32 -0.3
6,951 - GFF3668 0.32 +0.6
6,951 - GFF3668 0.32 -0.5
6,953 - GFF3668 0.32 +0.7

Or see this region's nucleotide sequence