Strain Fitness in Xanthobacter sp. DMC5 around GFF3664

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3663 and GFF3664 are separated by 191 nucleotidesGFF3664 and GFF3665 are separated by 30 nucleotides GFF3663 - hypothetical protein, at 805 to 2,877 GFF3663 GFF3664 - hypothetical protein, at 3,069 to 3,995 GFF3664 GFF3665 - hypothetical protein, at 4,026 to 4,946 GFF3665 Position (kb) 3 4Strain fitness (log2 ratio) -1 0 1 2at 3.015 kb on + strandat 3.168 kb on + strand, within GFF3664at 3.168 kb on + strand, within GFF3664at 3.168 kb on + strand, within GFF3664at 3.169 kb on - strand, within GFF3664at 3.169 kb on - strand, within GFF3664at 3.271 kb on - strand, within GFF3664at 3.339 kb on + strand, within GFF3664at 3.360 kb on + strand, within GFF3664at 3.360 kb on + strand, within GFF3664at 3.360 kb on + strand, within GFF3664at 3.361 kb on - strand, within GFF3664at 3.361 kb on - strand, within GFF3664at 3.417 kb on + strand, within GFF3664at 3.417 kb on + strand, within GFF3664at 3.417 kb on + strand, within GFF3664at 3.417 kb on + strand, within GFF3664at 3.417 kb on + strand, within GFF3664at 3.418 kb on - strand, within GFF3664at 3.418 kb on - strand, within GFF3664at 3.418 kb on - strand, within GFF3664at 3.418 kb on - strand, within GFF3664at 3.518 kb on - strand, within GFF3664at 3.579 kb on + strand, within GFF3664at 3.580 kb on - strand, within GFF3664at 3.588 kb on + strand, within GFF3664at 3.589 kb on - strand, within GFF3664at 3.838 kb on - strand, within GFF3664at 3.897 kb on + strand, within GFF3664at 3.926 kb on + strandat 3.926 kb on + strandat 4.131 kb on + strand, within GFF3665at 4.131 kb on + strand, within GFF3665at 4.131 kb on + strand, within GFF3665at 4.131 kb on + strand, within GFF3665at 4.132 kb on - strand, within GFF3665at 4.132 kb on - strand, within GFF3665at 4.132 kb on - strand, within GFF3665at 4.132 kb on - strand, within GFF3665at 4.133 kb on + strand, within GFF3665at 4.133 kb on + strand, within GFF3665at 4.133 kb on + strand, within GFF3665at 4.380 kb on + strand, within GFF3665at 4.380 kb on + strand, within GFF3665at 4.380 kb on + strand, within GFF3665at 4.380 kb on + strand, within GFF3665at 4.381 kb on - strand, within GFF3665at 4.381 kb on - strand, within GFF3665at 4.500 kb on + strand, within GFF3665at 4.500 kb on + strand, within GFF3665at 4.500 kb on + strand, within GFF3665at 4.501 kb on - strand, within GFF3665at 4.539 kb on + strand, within GFF3665at 4.540 kb on - strand, within GFF3665at 4.540 kb on - strand, within GFF3665at 4.540 kb on - strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.541 kb on + strand, within GFF3665at 4.542 kb on - strand, within GFF3665at 4.542 kb on - strand, within GFF3665at 4.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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3,015 + +0.4
3,168 + GFF3664 0.11 -0.5
3,168 + GFF3664 0.11 -0.0
3,168 + GFF3664 0.11 +0.6
3,169 - GFF3664 0.11 +0.1
3,169 - GFF3664 0.11 -0.2
3,271 - GFF3664 0.22 -0.4
3,339 + GFF3664 0.29 +0.2
3,360 + GFF3664 0.31 -0.9
3,360 + GFF3664 0.31 +0.2
3,360 + GFF3664 0.31 -1.2
3,361 - GFF3664 0.31 -0.7
3,361 - GFF3664 0.31 -0.0
3,417 + GFF3664 0.38 +0.2
3,417 + GFF3664 0.38 -0.3
3,417 + GFF3664 0.38 -0.3
3,417 + GFF3664 0.38 -0.1
3,417 + GFF3664 0.38 -0.8
3,418 - GFF3664 0.38 -0.6
3,418 - GFF3664 0.38 +0.6
3,418 - GFF3664 0.38 +0.1
3,418 - GFF3664 0.38 -1.1
3,518 - GFF3664 0.48 +0.0
3,579 + GFF3664 0.55 -1.7
3,580 - GFF3664 0.55 +0.1
3,588 + GFF3664 0.56 +0.5
3,589 - GFF3664 0.56 -0.9
3,838 - GFF3664 0.83 -0.2
3,897 + GFF3664 0.89 +0.6
3,926 + -0.5
3,926 + +0.2
4,131 + GFF3665 0.11 +0.1
4,131 + GFF3665 0.11 -0.5
4,131 + GFF3665 0.11 +0.1
4,131 + GFF3665 0.11 -0.6
4,132 - GFF3665 0.12 -0.1
4,132 - GFF3665 0.12 +0.3
4,132 - GFF3665 0.12 +0.1
4,132 - GFF3665 0.12 +0.4
4,133 + GFF3665 0.12 +0.1
4,133 + GFF3665 0.12 -0.3
4,133 + GFF3665 0.12 +1.8
4,380 + GFF3665 0.38 -0.4
4,380 + GFF3665 0.38 +0.8
4,380 + GFF3665 0.38 -0.2
4,380 + GFF3665 0.38 +0.4
4,381 - GFF3665 0.39 +0.7
4,381 - GFF3665 0.39 +0.2
4,500 + GFF3665 0.51 -0.8
4,500 + GFF3665 0.51 -0.6
4,500 + GFF3665 0.51 +0.4
4,501 - GFF3665 0.52 -0.6
4,539 + GFF3665 0.56 +0.4
4,540 - GFF3665 0.56 -0.5
4,540 - GFF3665 0.56 -0.3
4,540 - GFF3665 0.56 -0.2
4,541 + GFF3665 0.56 -0.0
4,541 + GFF3665 0.56 -0.2
4,541 + GFF3665 0.56 -0.8
4,541 + GFF3665 0.56 +0.0
4,541 + GFF3665 0.56 -0.2
4,541 + GFF3665 0.56 +0.6
4,541 + GFF3665 0.56 -0.2
4,542 - GFF3665 0.56 -0.3
4,542 - GFF3665 0.56 +0.6
4,952 + +0.8

Or see this region's nucleotide sequence