Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3640 and GFF3641 are separated by 353 nucleotides GFF3641 and GFF3642 are separated by 107 nucleotides
GFF3640 - hypothetical protein, at 504,471 to 506,039
GFF3640
GFF3641 - hypothetical protein, at 506,393 to 507,571
GFF3641
GFF3642 - hypothetical protein, at 507,679 to 510,192
GFF3642
Position (kb) 506
507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 505.409 kb on - strand, within GFF3640 at 505.409 kb on - strand, within GFF3640 at 505.409 kb on - strand, within GFF3640 at 505.409 kb on - strand, within GFF3640 at 505.538 kb on + strand, within GFF3640 at 505.539 kb on - strand, within GFF3640 at 505.539 kb on - strand, within GFF3640 at 505.539 kb on - strand, within GFF3640 at 505.586 kb on + strand, within GFF3640 at 505.770 kb on + strand, within GFF3640 at 505.771 kb on - strand, within GFF3640 at 505.776 kb on - strand, within GFF3640 at 505.801 kb on - strand, within GFF3640 at 505.801 kb on - strand, within GFF3640 at 505.801 kb on - strand, within GFF3640 at 505.851 kb on + strand, within GFF3640 at 505.921 kb on + strand at 505.922 kb on - strand at 505.990 kb on + strand at 505.991 kb on - strand at 505.991 kb on - strand at 505.991 kb on - strand at 506.004 kb on - strand at 506.008 kb on + strand at 506.009 kb on - strand at 506.030 kb on + strand at 506.031 kb on - strand at 506.075 kb on + strand at 506.076 kb on - strand at 506.080 kb on - strand at 506.080 kb on - strand at 506.115 kb on + strand at 506.163 kb on + strand at 506.163 kb on + strand at 506.163 kb on + strand at 506.163 kb on + strand at 506.164 kb on - strand at 506.164 kb on - strand at 506.164 kb on - strand at 506.183 kb on + strand at 506.183 kb on + strand at 506.212 kb on + strand at 506.212 kb on + strand at 506.212 kb on + strand at 506.212 kb on + strand at 506.213 kb on - strand at 506.216 kb on - strand at 506.246 kb on + strand at 506.280 kb on + strand at 506.280 kb on + strand at 506.280 kb on + strand at 506.281 kb on - strand at 506.293 kb on + strand at 506.294 kb on - strand at 506.298 kb on - strand at 506.298 kb on - strand at 506.298 kb on - strand at 506.348 kb on + strand at 506.356 kb on - strand at 506.390 kb on - strand at 506.471 kb on + strand at 506.507 kb on + strand at 506.508 kb on - strand at 506.510 kb on + strand at 506.510 kb on + strand at 506.510 kb on + strand at 506.511 kb on - strand, within GFF3641 at 506.567 kb on - strand, within GFF3641 at 506.652 kb on - strand, within GFF3641 at 506.704 kb on - strand, within GFF3641 at 506.704 kb on - strand, within GFF3641 at 506.732 kb on + strand, within GFF3641 at 506.732 kb on + strand, within GFF3641 at 506.732 kb on + strand, within GFF3641 at 506.732 kb on + strand, within GFF3641 at 506.733 kb on - strand, within GFF3641 at 506.733 kb on - strand, within GFF3641 at 506.745 kb on + strand, within GFF3641 at 506.746 kb on - strand, within GFF3641 at 506.808 kb on - strand, within GFF3641 at 506.808 kb on - strand, within GFF3641 at 506.813 kb on + strand, within GFF3641 at 506.814 kb on - strand, within GFF3641 at 506.822 kb on + strand, within GFF3641 at 506.824 kb on + strand, within GFF3641 at 506.825 kb on - strand, within GFF3641 at 506.825 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.858 kb on - strand, within GFF3641 at 506.968 kb on + strand, within GFF3641 at 506.976 kb on + strand, within GFF3641 at 506.976 kb on + strand, within GFF3641 at 506.976 kb on + strand, within GFF3641 at 506.976 kb on + strand, within GFF3641 at 506.976 kb on + strand, within GFF3641 at 506.977 kb on - strand, within GFF3641 at 506.977 kb on - strand, within GFF3641 at 506.977 kb on - strand, within GFF3641 at 506.977 kb on - strand, within GFF3641 at 506.988 kb on - strand, within GFF3641 at 507.039 kb on + strand, within GFF3641 at 507.039 kb on + strand, within GFF3641 at 507.039 kb on + strand, within GFF3641 at 507.040 kb on - strand, within GFF3641 at 507.040 kb on - strand, within GFF3641 at 507.040 kb on - strand, within GFF3641 at 507.040 kb on - strand, within GFF3641 at 507.040 kb on - strand, within GFF3641 at 507.040 kb on - strand, within GFF3641 at 507.109 kb on + strand, within GFF3641 at 507.240 kb on + strand, within GFF3641 at 507.240 kb on + strand, within GFF3641 at 507.240 kb on + strand, within GFF3641 at 507.241 kb on - strand, within GFF3641 at 507.241 kb on - strand, within GFF3641 at 507.369 kb on + strand, within GFF3641 at 507.369 kb on + strand, within GFF3641 at 507.370 kb on - strand, within GFF3641 at 507.391 kb on + strand, within GFF3641 at 507.391 kb on + strand, within GFF3641 at 507.391 kb on + strand, within GFF3641 at 507.391 kb on + strand, within GFF3641 at 507.392 kb on - strand, within GFF3641 at 507.392 kb on - strand, within GFF3641 at 507.393 kb on + strand, within GFF3641 at 507.393 kb on + strand, within GFF3641 at 507.393 kb on + strand, within GFF3641 at 507.401 kb on - strand, within GFF3641 at 507.414 kb on + strand, within GFF3641 at 507.414 kb on + strand, within GFF3641 at 507.414 kb on + strand, within GFF3641 at 507.415 kb on - strand, within GFF3641 at 507.439 kb on + strand, within GFF3641 at 507.501 kb on + strand at 507.502 kb on - strand at 507.523 kb on - strand at 507.528 kb on + strand at 507.528 kb on + strand at 507.528 kb on + strand at 507.528 kb on + strand at 507.528 kb on + strand at 507.528 kb on + strand at 507.529 kb on - strand at 507.529 kb on - strand at 507.561 kb on + strand at 507.562 kb on - strand at 507.585 kb on + strand at 507.586 kb on - strand at 507.709 kb on + strand at 507.709 kb on + strand at 507.710 kb on - strand at 507.710 kb on - strand at 507.723 kb on + strand at 507.724 kb on - strand at 507.729 kb on - strand at 507.729 kb on - strand at 507.729 kb on - strand at 507.729 kb on - strand at 507.744 kb on + strand at 507.745 kb on - strand at 507.806 kb on - strand at 507.806 kb on - strand at 507.806 kb on - strand at 507.806 kb on - strand at 507.829 kb on + strand at 507.830 kb on - strand at 507.904 kb on - strand at 507.962 kb on + strand, within GFF3642 at 507.962 kb on + strand, within GFF3642 at 507.963 kb on - strand, within GFF3642 at 507.994 kb on - strand, within GFF3642 at 507.994 kb on - strand, within GFF3642 at 508.042 kb on - strand, within GFF3642 at 508.127 kb on + strand, within GFF3642 at 508.127 kb on + strand, within GFF3642 at 508.127 kb on + strand, within GFF3642 at 508.128 kb on - strand, within GFF3642 at 508.128 kb on - strand, within GFF3642 at 508.128 kb on - strand, within GFF3642 at 508.130 kb on + strand, within GFF3642 at 508.130 kb on + strand, within GFF3642 at 508.131 kb on - strand, within GFF3642 at 508.131 kb on - strand, within GFF3642 at 508.131 kb on - strand, within GFF3642 at 508.131 kb on - strand, within GFF3642 at 508.131 kb on - strand, within GFF3642 at 508.131 kb on - strand, within GFF3642 at 508.131 kb on - strand, within GFF3642 at 508.131 kb on - strand, within GFF3642 at 508.202 kb on + strand, within GFF3642 at 508.202 kb on + strand, within GFF3642
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 505,409 - GFF3640 0.60 -0.1 505,409 - GFF3640 0.60 +0.0 505,409 - GFF3640 0.60 -1.2 505,409 - GFF3640 0.60 -2.8 505,538 + GFF3640 0.68 -1.0 505,539 - GFF3640 0.68 -1.5 505,539 - GFF3640 0.68 +0.5 505,539 - GFF3640 0.68 -1.8 505,586 + GFF3640 0.71 -1.2 505,770 + GFF3640 0.83 -0.4 505,771 - GFF3640 0.83 -0.8 505,776 - GFF3640 0.83 -0.2 505,801 - GFF3640 0.85 -0.7 505,801 - GFF3640 0.85 -2.3 505,801 - GFF3640 0.85 -0.2 505,851 + GFF3640 0.88 -0.7 505,921 + -0.6 505,922 - -1.0 505,990 + -0.4 505,991 - -0.3 505,991 - -1.2 505,991 - +0.3 506,004 - -0.5 506,008 + -0.2 506,009 - -1.2 506,030 + -1.1 506,031 - -0.4 506,075 + -1.1 506,076 - -0.8 506,080 - -1.8 506,080 - -1.1 506,115 + -1.0 506,163 + -1.5 506,163 + -0.5 506,163 + -1.3 506,163 + -0.5 506,164 - -1.0 506,164 - -1.3 506,164 - -0.4 506,183 + -0.3 506,183 + -1.0 506,212 + +0.6 506,212 + -1.1 506,212 + -2.1 506,212 + -1.3 506,213 - -1.4 506,216 - -1.3 506,246 + -0.3 506,280 + -0.5 506,280 + +0.3 506,280 + -2.4 506,281 - -1.6 506,293 + +0.6 506,294 - -1.2 506,298 - -0.8 506,298 - -1.5 506,298 - -0.7 506,348 + -0.7 506,356 - -2.1 506,390 - -0.2 506,471 + +0.8 506,507 + +0.4 506,508 - +0.9 506,510 + +0.8 506,510 + +1.2 506,510 + +0.0 506,511 - GFF3641 0.10 +0.1 506,567 - GFF3641 0.15 -0.6 506,652 - GFF3641 0.22 +1.6 506,704 - GFF3641 0.26 +1.2 506,704 - GFF3641 0.26 +0.1 506,732 + GFF3641 0.29 +0.2 506,732 + GFF3641 0.29 +0.6 506,732 + GFF3641 0.29 +1.4 506,732 + GFF3641 0.29 +0.6 506,733 - GFF3641 0.29 +0.3 506,733 - GFF3641 0.29 +0.8 506,745 + GFF3641 0.30 -0.1 506,746 - GFF3641 0.30 +1.0 506,808 - GFF3641 0.35 +0.0 506,808 - GFF3641 0.35 +0.3 506,813 + GFF3641 0.36 +1.3 506,814 - GFF3641 0.36 +0.7 506,822 + GFF3641 0.36 +1.4 506,824 + GFF3641 0.37 +0.5 506,825 - GFF3641 0.37 -0.3 506,825 - GFF3641 0.37 +1.0 506,858 - GFF3641 0.39 +0.8 506,858 - GFF3641 0.39 +0.2 506,858 - GFF3641 0.39 +1.6 506,858 - GFF3641 0.39 +0.7 506,858 - GFF3641 0.39 +1.0 506,858 - GFF3641 0.39 +0.2 506,968 + GFF3641 0.49 +0.9 506,976 + GFF3641 0.49 +0.4 506,976 + GFF3641 0.49 +0.8 506,976 + GFF3641 0.49 +0.6 506,976 + GFF3641 0.49 +0.4 506,976 + GFF3641 0.49 -0.4 506,977 - GFF3641 0.50 +0.6 506,977 - GFF3641 0.50 +1.0 506,977 - GFF3641 0.50 +1.1 506,977 - GFF3641 0.50 +0.3 506,988 - GFF3641 0.50 +1.3 507,039 + GFF3641 0.55 +1.2 507,039 + GFF3641 0.55 +0.6 507,039 + GFF3641 0.55 +0.5 507,040 - GFF3641 0.55 +1.3 507,040 - GFF3641 0.55 +0.5 507,040 - GFF3641 0.55 +1.3 507,040 - GFF3641 0.55 +0.5 507,040 - GFF3641 0.55 +0.7 507,040 - GFF3641 0.55 +2.0 507,109 + GFF3641 0.61 +1.6 507,240 + GFF3641 0.72 +0.5 507,240 + GFF3641 0.72 +2.2 507,240 + GFF3641 0.72 +0.4 507,241 - GFF3641 0.72 +0.8 507,241 - GFF3641 0.72 +0.6 507,369 + GFF3641 0.83 +0.3 507,369 + GFF3641 0.83 +1.6 507,370 - GFF3641 0.83 +0.9 507,391 + GFF3641 0.85 +0.3 507,391 + GFF3641 0.85 +1.1 507,391 + GFF3641 0.85 +1.3 507,391 + GFF3641 0.85 +1.0 507,392 - GFF3641 0.85 +1.4 507,392 - GFF3641 0.85 +0.8 507,393 + GFF3641 0.85 +0.8 507,393 + GFF3641 0.85 +0.8 507,393 + GFF3641 0.85 +1.2 507,401 - GFF3641 0.85 -0.4 507,414 + GFF3641 0.87 +1.2 507,414 + GFF3641 0.87 +0.9 507,414 + GFF3641 0.87 +1.0 507,415 - GFF3641 0.87 +1.1 507,439 + GFF3641 0.89 +0.9 507,501 + +2.0 507,502 - +1.0 507,523 - +1.9 507,528 + +0.6 507,528 + +0.6 507,528 + -0.4 507,528 + -0.1 507,528 + +0.6 507,528 + +1.2 507,529 - +1.2 507,529 - +1.3 507,561 + +0.5 507,562 - +1.9 507,585 + -0.4 507,586 - +1.5 507,709 + +0.8 507,709 + -0.9 507,710 - +0.0 507,710 - -0.1 507,723 + +0.9 507,724 - +0.0 507,729 - +0.3 507,729 - +0.4 507,729 - +0.8 507,729 - +1.5 507,744 + -1.5 507,745 - +0.1 507,806 - +0.3 507,806 - +0.7 507,806 - -0.3 507,806 - -0.4 507,829 + +0.4 507,830 - -0.3 507,904 - +0.4 507,962 + GFF3642 0.11 +0.7 507,962 + GFF3642 0.11 -0.1 507,963 - GFF3642 0.11 +0.3 507,994 - GFF3642 0.13 +0.3 507,994 - GFF3642 0.13 +0.3 508,042 - GFF3642 0.14 +0.4 508,127 + GFF3642 0.18 +0.9 508,127 + GFF3642 0.18 +0.2 508,127 + GFF3642 0.18 +0.2 508,128 - GFF3642 0.18 +0.4 508,128 - GFF3642 0.18 -1.0 508,128 - GFF3642 0.18 +0.3 508,130 + GFF3642 0.18 +0.6 508,130 + GFF3642 0.18 +1.0 508,131 - GFF3642 0.18 +0.8 508,131 - GFF3642 0.18 +0.4 508,131 - GFF3642 0.18 +0.2 508,131 - GFF3642 0.18 +0.4 508,131 - GFF3642 0.18 +0.4 508,131 - GFF3642 0.18 -0.2 508,131 - GFF3642 0.18 -0.1 508,131 - GFF3642 0.18 -0.6 508,202 + GFF3642 0.21 -0.8 508,202 + GFF3642 0.21 +0.3
Or see this region's nucleotide sequence