Strain Fitness in Xanthobacter sp. DMC5 around GFF3639

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3638 and GFF3639 are separated by 249 nucleotidesGFF3639 and GFF3640 are separated by 400 nucleotides GFF3638 - hypothetical protein, at 501,458 to 502,444 GFF3638 GFF3639 - IS1182 family transposase ISGdi16, at 502,694 to 504,070 GFF3639 GFF3640 - hypothetical protein, at 504,471 to 506,039 GFF3640 Position (kb) 502 503 504 505Strain fitness (log2 ratio) -3 -2 -1 0 1at 501.915 kb on + strand, within GFF3638at 501.915 kb on + strand, within GFF3638at 501.916 kb on - strand, within GFF3638at 501.916 kb on - strand, within GFF3638at 501.916 kb on - strand, within GFF3638at 501.922 kb on + strand, within GFF3638at 501.922 kb on + strand, within GFF3638at 501.922 kb on + strand, within GFF3638at 501.923 kb on - strand, within GFF3638at 502.009 kb on + strand, within GFF3638at 502.010 kb on - strand, within GFF3638at 502.010 kb on - strand, within GFF3638at 502.010 kb on - strand, within GFF3638at 502.063 kb on - strand, within GFF3638at 502.063 kb on - strand, within GFF3638at 502.213 kb on + strand, within GFF3638at 502.214 kb on - strand, within GFF3638at 502.214 kb on - strand, within GFF3638at 502.233 kb on - strand, within GFF3638at 502.444 kb on + strandat 502.444 kb on + strandat 502.445 kb on - strandat 502.445 kb on - strandat 502.445 kb on - strandat 502.445 kb on - strandat 502.498 kb on + strandat 502.498 kb on + strandat 502.509 kb on + strandat 502.566 kb on + strandat 502.607 kb on + strandat 502.702 kb on + strandat 502.808 kb on + strandat 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.982 kb on - strand, within GFF3639at 502.982 kb on - strand, within GFF3639at 503.025 kb on + strand, within GFF3639at 503.026 kb on - strand, within GFF3639at 503.082 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.136 kb on + strand, within GFF3639at 503.136 kb on + strand, within GFF3639at 503.137 kb on - strand, within GFF3639at 503.253 kb on + strand, within GFF3639at 503.254 kb on - strand, within GFF3639at 503.403 kb on + strand, within GFF3639at 503.403 kb on + strand, within GFF3639at 503.404 kb on - strand, within GFF3639at 503.415 kb on + strand, within GFF3639at 503.416 kb on - strand, within GFF3639at 503.539 kb on - strand, within GFF3639at 503.805 kb on + strand, within GFF3639at 503.805 kb on + strand, within GFF3639at 503.806 kb on - strand, within GFF3639at 503.806 kb on - strand, within GFF3639at 503.865 kb on + strand, within GFF3639at 503.928 kb on + strand, within GFF3639at 503.928 kb on + strand, within GFF3639at 503.929 kb on - strand, within GFF3639at 503.929 kb on - strand, within GFF3639at 503.929 kb on - strand, within GFF3639at 504.030 kb on + strandat 504.030 kb on + strandat 504.222 kb on + strandat 504.230 kb on + strandat 504.230 kb on + strandat 504.231 kb on - strandat 504.340 kb on + strandat 504.342 kb on + strandat 504.350 kb on + strandat 504.350 kb on + strandat 504.351 kb on - strandat 504.351 kb on - strandat 504.374 kb on + strandat 504.375 kb on - strandat 504.375 kb on - strandat 504.447 kb on - strandat 504.449 kb on - strandat 504.462 kb on + strandat 504.463 kb on - strandat 504.484 kb on - strandat 504.484 kb on - strandat 504.506 kb on + strandat 504.509 kb on - strandat 504.539 kb on + strandat 504.539 kb on + strandat 504.539 kb on + strandat 504.549 kb on - strandat 504.607 kb on - strandat 504.607 kb on - strandat 504.616 kb on + strandat 504.656 kb on + strand, within GFF3640at 504.657 kb on - strand, within GFF3640at 504.657 kb on - strand, within GFF3640at 504.657 kb on - strand, within GFF3640at 504.669 kb on + strand, within GFF3640at 504.770 kb on + strand, within GFF3640at 504.771 kb on - strand, within GFF3640at 504.773 kb on - strand, within GFF3640at 504.788 kb on + strand, within GFF3640at 504.789 kb on - strand, within GFF3640at 504.798 kb on - strand, within GFF3640at 504.868 kb on - strand, within GFF3640at 504.908 kb on + strand, within GFF3640at 504.909 kb on - strand, within GFF3640at 504.909 kb on - strand, within GFF3640at 504.909 kb on - strand, within GFF3640at 504.909 kb on - strand, within GFF3640at 504.910 kb on + strand, within GFF3640at 504.910 kb on + strand, within GFF3640at 504.911 kb on - strand, within GFF3640at 504.911 kb on - strand, within GFF3640at 504.935 kb on - strand, within GFF3640at 504.969 kb on + strand, within GFF3640at 504.969 kb on + strand, within GFF3640at 504.969 kb on + strand, within GFF3640at 504.969 kb on + strand, within GFF3640at 505.015 kb on + strand, within GFF3640at 505.016 kb on - strand, within GFF3640at 505.038 kb on + strand, within GFF3640at 505.039 kb on + strand, within GFF3640at 505.039 kb on + strand, within GFF3640at 505.039 kb on + strand, within GFF3640at 505.039 kb on + strand, within GFF3640at 505.040 kb on - strand, within GFF3640at 505.040 kb on - strand, within GFF3640at 505.040 kb on - strand, within GFF3640at 505.040 kb on - strand, within GFF3640at 505.040 kb on - strand, within GFF3640at 505.069 kb on + strand, within GFF3640at 505.070 kb on - strand, within GFF3640at 505.070 kb on - strand, within GFF3640

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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501,915 + GFF3638 0.46 -0.6
501,915 + GFF3638 0.46 -0.2
501,916 - GFF3638 0.46 +0.0
501,916 - GFF3638 0.46 -1.0
501,916 - GFF3638 0.46 +0.0
501,922 + GFF3638 0.47 -0.1
501,922 + GFF3638 0.47 +0.2
501,922 + GFF3638 0.47 -0.2
501,923 - GFF3638 0.47 +0.4
502,009 + GFF3638 0.56 +0.1
502,010 - GFF3638 0.56 -0.2
502,010 - GFF3638 0.56 +1.0
502,010 - GFF3638 0.56 +0.4
502,063 - GFF3638 0.61 -0.5
502,063 - GFF3638 0.61 +0.1
502,213 + GFF3638 0.76 +0.5
502,214 - GFF3638 0.77 +0.8
502,214 - GFF3638 0.77 -0.9
502,233 - GFF3638 0.79 -0.2
502,444 + -0.5
502,444 + -1.3
502,445 - -0.2
502,445 - -0.5
502,445 - -0.7
502,445 - -0.4
502,498 + -0.3
502,498 + -0.0
502,509 + -2.6
502,566 + -1.4
502,607 + +0.0
502,702 + +0.6
502,808 + -0.9
502,887 + GFF3639 0.14 -0.4
502,887 + GFF3639 0.14 -1.2
502,887 + GFF3639 0.14 -1.2
502,887 + GFF3639 0.14 +0.0
502,887 + GFF3639 0.14 -0.6
502,887 + GFF3639 0.14 +0.2
502,887 + GFF3639 0.14 +0.0
502,887 + GFF3639 0.14 -0.3
502,887 + GFF3639 0.14 -0.0
502,888 - GFF3639 0.14 +0.5
502,888 - GFF3639 0.14 -0.5
502,888 - GFF3639 0.14 -0.4
502,888 - GFF3639 0.14 -0.9
502,888 - GFF3639 0.14 +0.1
502,888 - GFF3639 0.14 +0.5
502,982 - GFF3639 0.21 +0.1
502,982 - GFF3639 0.21 -1.0
503,025 + GFF3639 0.24 -0.6
503,026 - GFF3639 0.24 -0.4
503,082 + GFF3639 0.28 -1.6
503,115 + GFF3639 0.31 +0.4
503,115 + GFF3639 0.31 +0.6
503,115 + GFF3639 0.31 -0.9
503,115 + GFF3639 0.31 -0.3
503,115 + GFF3639 0.31 -0.0
503,115 + GFF3639 0.31 -0.3
503,115 + GFF3639 0.31 -0.1
503,115 + GFF3639 0.31 -0.6
503,115 + GFF3639 0.31 -0.6
503,115 + GFF3639 0.31 +0.5
503,115 + GFF3639 0.31 +1.6
503,115 + GFF3639 0.31 -0.3
503,115 + GFF3639 0.31 +0.2
503,116 - GFF3639 0.31 +0.2
503,116 - GFF3639 0.31 +0.0
503,116 - GFF3639 0.31 +0.9
503,116 - GFF3639 0.31 -1.1
503,116 - GFF3639 0.31 +0.9
503,116 - GFF3639 0.31 -0.5
503,136 + GFF3639 0.32 -0.1
503,136 + GFF3639 0.32 +1.2
503,137 - GFF3639 0.32 -0.1
503,253 + GFF3639 0.41 -0.7
503,254 - GFF3639 0.41 +0.3
503,403 + GFF3639 0.51 -0.8
503,403 + GFF3639 0.51 -0.4
503,404 - GFF3639 0.52 -0.0
503,415 + GFF3639 0.52 -1.4
503,416 - GFF3639 0.52 +0.0
503,539 - GFF3639 0.61 -0.4
503,805 + GFF3639 0.81 +1.0
503,805 + GFF3639 0.81 -0.8
503,806 - GFF3639 0.81 +0.4
503,806 - GFF3639 0.81 +0.0
503,865 + GFF3639 0.85 -0.8
503,928 + GFF3639 0.90 -1.3
503,928 + GFF3639 0.90 +0.4
503,929 - GFF3639 0.90 -0.9
503,929 - GFF3639 0.90 -0.4
503,929 - GFF3639 0.90 -1.2
504,030 + -0.1
504,030 + -0.5
504,222 + -0.2
504,230 + -1.8
504,230 + -1.2
504,231 - -0.3
504,340 + -1.9
504,342 + -1.1
504,350 + -0.3
504,350 + -0.2
504,351 - -0.3
504,351 - -0.5
504,374 + +0.4
504,375 - -1.0
504,375 - -0.7
504,447 - -0.6
504,449 - -0.3
504,462 + -0.1
504,463 - -0.3
504,484 - -1.3
504,484 - +0.8
504,506 + -0.6
504,509 - -0.2
504,539 + -1.0
504,539 + +0.6
504,539 + +0.8
504,549 - +0.5
504,607 - +0.2
504,607 - -0.5
504,616 + -1.5
504,656 + GFF3640 0.12 -1.0
504,657 - GFF3640 0.12 -0.8
504,657 - GFF3640 0.12 -0.2
504,657 - GFF3640 0.12 +0.2
504,669 + GFF3640 0.13 -1.8
504,770 + GFF3640 0.19 -0.9
504,771 - GFF3640 0.19 -0.2
504,773 - GFF3640 0.19 -0.7
504,788 + GFF3640 0.20 +0.3
504,789 - GFF3640 0.20 +0.1
504,798 - GFF3640 0.21 +0.2
504,868 - GFF3640 0.25 +0.1
504,908 + GFF3640 0.28 -1.2
504,909 - GFF3640 0.28 -0.8
504,909 - GFF3640 0.28 -0.8
504,909 - GFF3640 0.28 -2.8
504,909 - GFF3640 0.28 -1.1
504,910 + GFF3640 0.28 -0.5
504,910 + GFF3640 0.28 -0.1
504,911 - GFF3640 0.28 -0.6
504,911 - GFF3640 0.28 -1.3
504,935 - GFF3640 0.30 -0.8
504,969 + GFF3640 0.32 -1.0
504,969 + GFF3640 0.32 -0.5
504,969 + GFF3640 0.32 -0.6
504,969 + GFF3640 0.32 -1.0
505,015 + GFF3640 0.35 -1.2
505,016 - GFF3640 0.35 -1.3
505,038 + GFF3640 0.36 -1.7
505,039 + GFF3640 0.36 -0.6
505,039 + GFF3640 0.36 -0.8
505,039 + GFF3640 0.36 -0.7
505,039 + GFF3640 0.36 -1.0
505,040 - GFF3640 0.36 -0.6
505,040 - GFF3640 0.36 -0.5
505,040 - GFF3640 0.36 +1.0
505,040 - GFF3640 0.36 -0.4
505,040 - GFF3640 0.36 +0.2
505,069 + GFF3640 0.38 -2.7
505,070 - GFF3640 0.38 +0.3
505,070 - GFF3640 0.38 -0.9

Or see this region's nucleotide sequence