Strain Fitness in Xanthobacter sp. DMC5 around GFF3623

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3622 and GFF3623 are separated by 427 nucleotidesGFF3623 and GFF3624 overlap by 4 nucleotidesGFF3624 and GFF3625 are separated by 30 nucleotidesGFF3625 and GFF3626 are separated by 43 nucleotides GFF3622 - hypothetical protein, at 487,624 to 488,907 GFF3622 GFF3623 - Fe(3+) dicitrate transport system permease protein FecD, at 489,335 to 490,330 GFF3623 GFF3624 - Hemin import ATP-binding protein HmuV, at 490,327 to 490,644 GFF3624 GFF3625 - Fe(3+) dicitrate transport ATP-binding protein FecE, at 490,675 to 491,067 GFF3625 GFF3626 - hypothetical protein, at 491,111 to 491,827 GFF3626 Position (kb) 489 490 491Strain fitness (log2 ratio) -2 -1 0 1at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.394 kb on - strand, within GFF3622at 488.399 kb on + strand, within GFF3622at 488.400 kb on - strand, within GFF3622at 488.400 kb on - strand, within GFF3622at 488.463 kb on + strand, within GFF3622at 488.463 kb on + strand, within GFF3622at 488.464 kb on - strand, within GFF3622at 488.464 kb on - strand, within GFF3622at 488.465 kb on + strand, within GFF3622at 488.465 kb on + strand, within GFF3622at 488.465 kb on + strand, within GFF3622at 488.466 kb on - strand, within GFF3622at 488.466 kb on - strand, within GFF3622at 488.493 kb on - strand, within GFF3622at 488.493 kb on - strand, within GFF3622at 488.581 kb on - strand, within GFF3622at 488.672 kb on + strand, within GFF3622at 488.672 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.683 kb on - strand, within GFF3622at 488.683 kb on - strand, within GFF3622at 488.683 kb on - strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.724 kb on - strand, within GFF3622at 488.724 kb on - strand, within GFF3622at 488.724 kb on - strand, within GFF3622at 488.756 kb on + strand, within GFF3622at 488.756 kb on + strand, within GFF3622at 488.757 kb on - strand, within GFF3622at 488.785 kb on + strandat 488.785 kb on + strandat 488.786 kb on - strandat 488.786 kb on - strandat 488.786 kb on - strandat 488.786 kb on - strandat 488.910 kb on - strandat 488.910 kb on - strandat 488.910 kb on - strandat 488.910 kb on - strandat 488.933 kb on + strandat 488.933 kb on + strandat 488.933 kb on + strandat 488.933 kb on + strandat 488.934 kb on - strandat 489.007 kb on + strandat 489.008 kb on - strandat 489.008 kb on - strandat 489.008 kb on - strandat 489.110 kb on + strandat 489.110 kb on + strandat 489.110 kb on + strandat 489.110 kb on + strandat 489.111 kb on - strandat 489.125 kb on + strandat 489.312 kb on + strandat 489.313 kb on - strandat 489.313 kb on - strandat 489.331 kb on + strandat 489.332 kb on - strandat 489.352 kb on + strandat 489.353 kb on - strandat 489.417 kb on - strandat 489.417 kb on - strandat 489.454 kb on - strand, within GFF3623at 489.454 kb on - strand, within GFF3623at 489.475 kb on - strand, within GFF3623at 489.543 kb on + strand, within GFF3623at 489.543 kb on + strand, within GFF3623at 489.544 kb on - strand, within GFF3623at 489.650 kb on + strand, within GFF3623at 489.650 kb on + strand, within GFF3623at 489.650 kb on + strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.691 kb on - strand, within GFF3623at 489.845 kb on + strand, within GFF3623at 489.845 kb on + strand, within GFF3623at 489.845 kb on + strand, within GFF3623at 489.846 kb on - strand, within GFF3623at 489.846 kb on - strand, within GFF3623at 489.882 kb on + strand, within GFF3623at 489.882 kb on + strand, within GFF3623at 489.883 kb on - strand, within GFF3623at 489.883 kb on - strand, within GFF3623at 489.936 kb on + strand, within GFF3623at 489.936 kb on + strand, within GFF3623at 489.936 kb on + strand, within GFF3623at 489.936 kb on + strand, within GFF3623at 489.937 kb on - strand, within GFF3623at 489.937 kb on - strand, within GFF3623at 489.937 kb on - strand, within GFF3623at 489.937 kb on - strand, within GFF3623at 490.113 kb on + strand, within GFF3623at 490.113 kb on + strand, within GFF3623at 490.113 kb on + strand, within GFF3623at 490.114 kb on - strand, within GFF3623at 490.114 kb on - strand, within GFF3623at 490.507 kb on + strand, within GFF3624at 490.564 kb on + strand, within GFF3624at 490.564 kb on + strand, within GFF3624at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.720 kb on - strand, within GFF3625at 490.957 kb on - strand, within GFF3625at 491.146 kb on + strandat 491.260 kb on - strand, within GFF3626at 491.318 kb on + strand, within GFF3626at 491.318 kb on + strand, within GFF3626

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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488,393 + GFF3622 0.60 -0.1
488,393 + GFF3622 0.60 -0.2
488,393 + GFF3622 0.60 +0.5
488,393 + GFF3622 0.60 -0.2
488,393 + GFF3622 0.60 +0.6
488,394 - GFF3622 0.60 +0.8
488,399 + GFF3622 0.60 +0.5
488,400 - GFF3622 0.60 +0.4
488,400 - GFF3622 0.60 +0.2
488,463 + GFF3622 0.65 +0.3
488,463 + GFF3622 0.65 +0.1
488,464 - GFF3622 0.65 +0.1
488,464 - GFF3622 0.65 -0.4
488,465 + GFF3622 0.65 +0.1
488,465 + GFF3622 0.65 +1.3
488,465 + GFF3622 0.65 +0.2
488,466 - GFF3622 0.66 +1.0
488,466 - GFF3622 0.66 +0.3
488,493 - GFF3622 0.68 +0.7
488,493 - GFF3622 0.68 +0.4
488,581 - GFF3622 0.75 +0.5
488,672 + GFF3622 0.82 +0.0
488,672 + GFF3622 0.82 -0.4
488,682 + GFF3622 0.82 -0.2
488,682 + GFF3622 0.82 +0.2
488,682 + GFF3622 0.82 +0.2
488,682 + GFF3622 0.82 -0.9
488,683 - GFF3622 0.82 -1.0
488,683 - GFF3622 0.82 -0.3
488,683 - GFF3622 0.82 -0.2
488,723 + GFF3622 0.86 -1.8
488,723 + GFF3622 0.86 +0.7
488,723 + GFF3622 0.86 -0.9
488,723 + GFF3622 0.86 -1.3
488,724 - GFF3622 0.86 -0.7
488,724 - GFF3622 0.86 -0.0
488,724 - GFF3622 0.86 +0.7
488,756 + GFF3622 0.88 +0.2
488,756 + GFF3622 0.88 +0.1
488,757 - GFF3622 0.88 -0.1
488,785 + +0.6
488,785 + +0.0
488,786 - +1.6
488,786 - +0.1
488,786 - +0.6
488,786 - +0.8
488,910 - -0.2
488,910 - -0.0
488,910 - +1.3
488,910 - -0.9
488,933 + +0.6
488,933 + +0.2
488,933 + -0.3
488,933 + +0.6
488,934 - -2.0
489,007 + -0.5
489,008 - -1.0
489,008 - -0.4
489,008 - -0.2
489,110 + -1.0
489,110 + -0.5
489,110 + -0.8
489,110 + -0.5
489,111 - -1.1
489,125 + -0.4
489,312 + -0.3
489,313 - +1.6
489,313 - -0.6
489,331 + -0.2
489,332 - -1.1
489,352 + +0.3
489,353 - -0.5
489,417 - -1.1
489,417 - +0.2
489,454 - GFF3623 0.12 -0.4
489,454 - GFF3623 0.12 +0.6
489,475 - GFF3623 0.14 +0.8
489,543 + GFF3623 0.21 -0.4
489,543 + GFF3623 0.21 +0.8
489,544 - GFF3623 0.21 +0.1
489,650 + GFF3623 0.32 +0.6
489,650 + GFF3623 0.32 +1.6
489,650 + GFF3623 0.32 -0.7
489,651 - GFF3623 0.32 -0.1
489,651 - GFF3623 0.32 -1.3
489,651 - GFF3623 0.32 -0.2
489,651 - GFF3623 0.32 -0.2
489,651 - GFF3623 0.32 -0.4
489,651 - GFF3623 0.32 +0.1
489,691 - GFF3623 0.36 -0.5
489,845 + GFF3623 0.51 +0.3
489,845 + GFF3623 0.51 -0.0
489,845 + GFF3623 0.51 -0.8
489,846 - GFF3623 0.51 -0.3
489,846 - GFF3623 0.51 +0.6
489,882 + GFF3623 0.55 -0.0
489,882 + GFF3623 0.55 -0.9
489,883 - GFF3623 0.55 +0.4
489,883 - GFF3623 0.55 -0.4
489,936 + GFF3623 0.60 +0.4
489,936 + GFF3623 0.60 -0.0
489,936 + GFF3623 0.60 +0.5
489,936 + GFF3623 0.60 -0.8
489,937 - GFF3623 0.60 -0.8
489,937 - GFF3623 0.60 -0.6
489,937 - GFF3623 0.60 +0.7
489,937 - GFF3623 0.60 -0.3
490,113 + GFF3623 0.78 +0.6
490,113 + GFF3623 0.78 +1.0
490,113 + GFF3623 0.78 +0.9
490,114 - GFF3623 0.78 +0.3
490,114 - GFF3623 0.78 -0.3
490,507 + GFF3624 0.57 -0.1
490,564 + GFF3624 0.75 -0.4
490,564 + GFF3624 0.75 +0.1
490,719 + GFF3625 0.11 -1.3
490,719 + GFF3625 0.11 -0.7
490,719 + GFF3625 0.11 +1.5
490,719 + GFF3625 0.11 +0.3
490,719 + GFF3625 0.11 +0.0
490,719 + GFF3625 0.11 +0.5
490,719 + GFF3625 0.11 +0.3
490,720 - GFF3625 0.11 -0.3
490,957 - GFF3625 0.72 +0.4
491,146 + -0.2
491,260 - GFF3626 0.21 +0.3
491,318 + GFF3626 0.29 -0.2
491,318 + GFF3626 0.29 -0.2

Or see this region's nucleotide sequence