Strain Fitness in Xanthobacter sp. DMC5 around GFF3611

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3610 and GFF3611 are separated by 9 nucleotidesGFF3611 and GFF3612 are separated by 19 nucleotides GFF3610 - hypothetical protein, at 470,274 to 471,863 GFF3610 GFF3611 - hypothetical protein, at 471,873 to 472,328 GFF3611 GFF3612 - hypothetical protein, at 472,348 to 475,077 GFF3612 Position (kb) 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 470.935 kb on + strand, within GFF3610at 471.015 kb on + strand, within GFF3610at 471.015 kb on + strand, within GFF3610at 471.015 kb on + strand, within GFF3610at 471.015 kb on + strand, within GFF3610at 471.015 kb on + strand, within GFF3610at 471.015 kb on + strand, within GFF3610at 471.015 kb on + strand, within GFF3610at 471.015 kb on + strand, within GFF3610at 471.016 kb on - strand, within GFF3610at 471.016 kb on - strand, within GFF3610at 471.039 kb on + strand, within GFF3610at 471.039 kb on + strand, within GFF3610at 471.040 kb on - strand, within GFF3610at 471.043 kb on + strand, within GFF3610at 471.043 kb on + strand, within GFF3610at 471.043 kb on + strand, within GFF3610at 471.043 kb on + strand, within GFF3610at 471.043 kb on + strand, within GFF3610at 471.044 kb on - strand, within GFF3610at 471.044 kb on - strand, within GFF3610at 471.044 kb on - strand, within GFF3610at 471.044 kb on - strand, within GFF3610at 471.044 kb on - strand, within GFF3610at 471.044 kb on - strand, within GFF3610at 471.044 kb on - strand, within GFF3610at 471.059 kb on + strand, within GFF3610at 471.059 kb on + strand, within GFF3610at 471.059 kb on + strand, within GFF3610at 471.059 kb on + strand, within GFF3610at 471.060 kb on - strand, within GFF3610at 471.060 kb on - strand, within GFF3610at 471.101 kb on + strand, within GFF3610at 471.102 kb on - strand, within GFF3610at 471.120 kb on + strand, within GFF3610at 471.120 kb on + strand, within GFF3610at 471.120 kb on + strand, within GFF3610at 471.120 kb on + strand, within GFF3610at 471.120 kb on + strand, within GFF3610at 471.120 kb on + strand, within GFF3610at 471.120 kb on + strand, within GFF3610at 471.120 kb on + strand, within GFF3610at 471.193 kb on - strand, within GFF3610at 471.224 kb on + strand, within GFF3610at 471.224 kb on + strand, within GFF3610at 471.224 kb on + strand, within GFF3610at 471.225 kb on - strand, within GFF3610at 471.225 kb on - strand, within GFF3610at 471.250 kb on - strand, within GFF3610at 471.343 kb on - strand, within GFF3610at 471.343 kb on - strand, within GFF3610at 471.343 kb on - strand, within GFF3610at 471.426 kb on + strand, within GFF3610at 471.426 kb on + strand, within GFF3610at 471.426 kb on + strand, within GFF3610at 471.426 kb on + strand, within GFF3610at 471.426 kb on + strand, within GFF3610at 471.427 kb on - strand, within GFF3610at 471.427 kb on - strand, within GFF3610at 471.468 kb on + strand, within GFF3610at 471.471 kb on + strand, within GFF3610at 471.471 kb on + strand, within GFF3610at 471.471 kb on + strand, within GFF3610at 471.471 kb on + strand, within GFF3610at 471.472 kb on - strand, within GFF3610at 471.472 kb on - strand, within GFF3610at 471.472 kb on - strand, within GFF3610at 471.472 kb on - strand, within GFF3610at 471.472 kb on - strand, within GFF3610at 471.472 kb on - strand, within GFF3610at 471.472 kb on - strand, within GFF3610at 471.472 kb on - strand, within GFF3610at 471.578 kb on + strand, within GFF3610at 471.578 kb on + strand, within GFF3610at 471.579 kb on - strand, within GFF3610at 471.678 kb on + strand, within GFF3610at 471.680 kb on + strand, within GFF3610at 471.727 kb on + strandat 471.728 kb on - strandat 471.728 kb on - strandat 471.764 kb on + strandat 471.765 kb on - strandat 471.765 kb on - strandat 471.861 kb on + strandat 471.862 kb on - strandat 471.906 kb on - strandat 471.906 kb on - strandat 471.954 kb on - strand, within GFF3611at 472.002 kb on + strand, within GFF3611at 472.002 kb on + strand, within GFF3611at 472.003 kb on - strand, within GFF3611at 472.003 kb on - strand, within GFF3611at 472.003 kb on - strand, within GFF3611at 472.003 kb on - strand, within GFF3611at 472.003 kb on - strand, within GFF3611at 472.003 kb on - strand, within GFF3611at 472.004 kb on + strand, within GFF3611at 472.005 kb on - strand, within GFF3611at 472.005 kb on - strand, within GFF3611at 472.062 kb on + strand, within GFF3611at 472.062 kb on + strand, within GFF3611at 472.063 kb on - strand, within GFF3611at 472.302 kb on + strandat 472.303 kb on - strandat 472.303 kb on - strandat 472.326 kb on + strandat 472.349 kb on + strandat 472.349 kb on + strandat 472.350 kb on - strandat 472.350 kb on - strandat 472.478 kb on + strandat 472.478 kb on + strandat 472.478 kb on + strandat 472.478 kb on + strandat 472.478 kb on + strandat 472.479 kb on - strandat 472.479 kb on - strandat 472.479 kb on - strandat 472.479 kb on - strandat 472.479 kb on - strandat 472.530 kb on - strandat 472.530 kb on - strandat 472.547 kb on + strandat 472.547 kb on + strandat 472.547 kb on + strandat 472.547 kb on + strandat 472.548 kb on - strandat 472.548 kb on - strandat 472.559 kb on - strandat 472.569 kb on + strandat 472.569 kb on + strandat 472.569 kb on + strandat 472.569 kb on + strandat 472.569 kb on + strandat 472.569 kb on + strandat 472.569 kb on + strandat 472.569 kb on + strandat 472.570 kb on - strandat 472.570 kb on - strandat 472.570 kb on - strandat 472.640 kb on + strand, within GFF3612at 472.640 kb on + strand, within GFF3612at 472.641 kb on - strand, within GFF3612at 472.718 kb on + strand, within GFF3612at 472.719 kb on - strand, within GFF3612at 472.719 kb on - strand, within GFF3612at 472.745 kb on - strand, within GFF3612at 472.745 kb on - strand, within GFF3612at 472.812 kb on + strand, within GFF3612at 472.842 kb on + strand, within GFF3612at 472.842 kb on + strand, within GFF3612at 472.843 kb on - strand, within GFF3612at 472.843 kb on - strand, within GFF3612at 472.843 kb on - strand, within GFF3612at 472.869 kb on + strand, within GFF3612at 472.869 kb on + strand, within GFF3612at 472.870 kb on - strand, within GFF3612at 472.870 kb on - strand, within GFF3612at 472.870 kb on - strand, within GFF3612at 472.911 kb on - strand, within GFF3612at 472.913 kb on + strand, within GFF3612at 472.913 kb on + strand, within GFF3612at 472.913 kb on + strand, within GFF3612at 472.985 kb on + strand, within GFF3612at 472.985 kb on + strand, within GFF3612at 472.985 kb on + strand, within GFF3612at 472.985 kb on + strand, within GFF3612at 472.985 kb on + strand, within GFF3612at 472.985 kb on + strand, within GFF3612at 472.986 kb on - strand, within GFF3612at 472.986 kb on - strand, within GFF3612at 472.989 kb on + strand, within GFF3612at 472.990 kb on - strand, within GFF3612at 472.990 kb on - strand, within GFF3612at 472.991 kb on + strand, within GFF3612at 472.992 kb on - strand, within GFF3612at 473.038 kb on + strand, within GFF3612at 473.038 kb on + strand, within GFF3612at 473.039 kb on - strand, within GFF3612at 473.142 kb on + strand, within GFF3612at 473.142 kb on + strand, within GFF3612at 473.142 kb on + strand, within GFF3612at 473.143 kb on - strand, within GFF3612at 473.143 kb on - strand, within GFF3612at 473.143 kb on - strand, within GFF3612at 473.309 kb on + strand, within GFF3612at 473.309 kb on + strand, within GFF3612at 473.309 kb on + strand, within GFF3612at 473.309 kb on + strand, within GFF3612at 473.310 kb on - strand, within GFF3612at 473.310 kb on - strand, within GFF3612

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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470,935 + GFF3610 0.42 -0.5
471,015 + GFF3610 0.47 -0.7
471,015 + GFF3610 0.47 +0.5
471,015 + GFF3610 0.47 -0.3
471,015 + GFF3610 0.47 +0.6
471,015 + GFF3610 0.47 +0.1
471,015 + GFF3610 0.47 +0.8
471,015 + GFF3610 0.47 -0.5
471,015 + GFF3610 0.47 +0.8
471,016 - GFF3610 0.47 +1.0
471,016 - GFF3610 0.47 -0.1
471,039 + GFF3610 0.48 +0.9
471,039 + GFF3610 0.48 +0.5
471,040 - GFF3610 0.48 +1.0
471,043 + GFF3610 0.48 -0.1
471,043 + GFF3610 0.48 -0.4
471,043 + GFF3610 0.48 -0.3
471,043 + GFF3610 0.48 -0.1
471,043 + GFF3610 0.48 -0.6
471,044 - GFF3610 0.48 -0.2
471,044 - GFF3610 0.48 +0.3
471,044 - GFF3610 0.48 +0.6
471,044 - GFF3610 0.48 -0.8
471,044 - GFF3610 0.48 -0.4
471,044 - GFF3610 0.48 -2.8
471,044 - GFF3610 0.48 -1.2
471,059 + GFF3610 0.49 +1.1
471,059 + GFF3610 0.49 -0.4
471,059 + GFF3610 0.49 +0.2
471,059 + GFF3610 0.49 +0.6
471,060 - GFF3610 0.49 +0.0
471,060 - GFF3610 0.49 -0.0
471,101 + GFF3610 0.52 +1.1
471,102 - GFF3610 0.52 +0.1
471,120 + GFF3610 0.53 +2.6
471,120 + GFF3610 0.53 +0.2
471,120 + GFF3610 0.53 -1.4
471,120 + GFF3610 0.53 -0.2
471,120 + GFF3610 0.53 -0.4
471,120 + GFF3610 0.53 +0.9
471,120 + GFF3610 0.53 +0.2
471,120 + GFF3610 0.53 -0.8
471,193 - GFF3610 0.58 -0.2
471,224 + GFF3610 0.60 -0.3
471,224 + GFF3610 0.60 -0.4
471,224 + GFF3610 0.60 -0.0
471,225 - GFF3610 0.60 -0.2
471,225 - GFF3610 0.60 -0.6
471,250 - GFF3610 0.61 -0.2
471,343 - GFF3610 0.67 +0.0
471,343 - GFF3610 0.67 -0.9
471,343 - GFF3610 0.67 +0.5
471,426 + GFF3610 0.72 +0.4
471,426 + GFF3610 0.72 -0.7
471,426 + GFF3610 0.72 -1.1
471,426 + GFF3610 0.72 -0.6
471,426 + GFF3610 0.72 +0.2
471,427 - GFF3610 0.73 -0.1
471,427 - GFF3610 0.73 +0.1
471,468 + GFF3610 0.75 -0.1
471,471 + GFF3610 0.75 +0.3
471,471 + GFF3610 0.75 +0.2
471,471 + GFF3610 0.75 -0.3
471,471 + GFF3610 0.75 -0.5
471,472 - GFF3610 0.75 -2.8
471,472 - GFF3610 0.75 -0.4
471,472 - GFF3610 0.75 -1.3
471,472 - GFF3610 0.75 -0.4
471,472 - GFF3610 0.75 -0.9
471,472 - GFF3610 0.75 +0.7
471,472 - GFF3610 0.75 -0.2
471,472 - GFF3610 0.75 +0.1
471,578 + GFF3610 0.82 -0.3
471,578 + GFF3610 0.82 -0.2
471,579 - GFF3610 0.82 +0.4
471,678 + GFF3610 0.88 +0.2
471,680 + GFF3610 0.88 +0.3
471,727 + -0.1
471,728 - -0.3
471,728 - -0.1
471,764 + +0.6
471,765 - -1.8
471,765 - +0.2
471,861 + -1.0
471,862 - -2.4
471,906 - -0.1
471,906 - +0.2
471,954 - GFF3611 0.18 -0.8
472,002 + GFF3611 0.28 -1.2
472,002 + GFF3611 0.28 +0.1
472,003 - GFF3611 0.29 -0.5
472,003 - GFF3611 0.29 -0.1
472,003 - GFF3611 0.29 -0.3
472,003 - GFF3611 0.29 +0.0
472,003 - GFF3611 0.29 +0.1
472,003 - GFF3611 0.29 +1.4
472,004 + GFF3611 0.29 -0.5
472,005 - GFF3611 0.29 -0.4
472,005 - GFF3611 0.29 +0.7
472,062 + GFF3611 0.41 +0.8
472,062 + GFF3611 0.41 -0.0
472,063 - GFF3611 0.42 +0.3
472,302 + -0.8
472,303 - -0.3
472,303 - -0.0
472,326 + -0.2
472,349 + +0.8
472,349 + -1.1
472,350 - +0.6
472,350 - -0.2
472,478 + +0.9
472,478 + -0.6
472,478 + -0.9
472,478 + +1.5
472,478 + -0.3
472,479 - +0.2
472,479 - +0.3
472,479 - -0.2
472,479 - -1.3
472,479 - +0.6
472,530 - +0.8
472,530 - +0.5
472,547 + +0.2
472,547 + -0.2
472,547 + +0.4
472,547 + -0.6
472,548 - +0.1
472,548 - -0.7
472,559 - -0.9
472,569 + +0.4
472,569 + -0.1
472,569 + -0.2
472,569 + +0.2
472,569 + +0.2
472,569 + +0.3
472,569 + -0.6
472,569 + +0.7
472,570 - +0.5
472,570 - +1.4
472,570 - +0.2
472,640 + GFF3612 0.11 -0.6
472,640 + GFF3612 0.11 -0.3
472,641 - GFF3612 0.11 +0.6
472,718 + GFF3612 0.14 -0.3
472,719 - GFF3612 0.14 +2.0
472,719 - GFF3612 0.14 +0.3
472,745 - GFF3612 0.15 -0.6
472,745 - GFF3612 0.15 -0.2
472,812 + GFF3612 0.17 +0.3
472,842 + GFF3612 0.18 -0.7
472,842 + GFF3612 0.18 +0.6
472,843 - GFF3612 0.18 -0.1
472,843 - GFF3612 0.18 -0.3
472,843 - GFF3612 0.18 +0.1
472,869 + GFF3612 0.19 -0.4
472,869 + GFF3612 0.19 +0.3
472,870 - GFF3612 0.19 +0.4
472,870 - GFF3612 0.19 -0.3
472,870 - GFF3612 0.19 -0.2
472,911 - GFF3612 0.21 +1.0
472,913 + GFF3612 0.21 -0.8
472,913 + GFF3612 0.21 -0.2
472,913 + GFF3612 0.21 +0.6
472,985 + GFF3612 0.23 +0.4
472,985 + GFF3612 0.23 -0.4
472,985 + GFF3612 0.23 +0.2
472,985 + GFF3612 0.23 -1.2
472,985 + GFF3612 0.23 -0.3
472,985 + GFF3612 0.23 -0.1
472,986 - GFF3612 0.23 +0.3
472,986 - GFF3612 0.23 +0.3
472,989 + GFF3612 0.23 -1.1
472,990 - GFF3612 0.24 -0.1
472,990 - GFF3612 0.24 +0.8
472,991 + GFF3612 0.24 +0.0
472,992 - GFF3612 0.24 +0.4
473,038 + GFF3612 0.25 +0.0
473,038 + GFF3612 0.25 +0.9
473,039 - GFF3612 0.25 +1.4
473,142 + GFF3612 0.29 -0.1
473,142 + GFF3612 0.29 -0.5
473,142 + GFF3612 0.29 -0.6
473,143 - GFF3612 0.29 +0.0
473,143 - GFF3612 0.29 +0.2
473,143 - GFF3612 0.29 +0.2
473,309 + GFF3612 0.35 -0.5
473,309 + GFF3612 0.35 -0.3
473,309 + GFF3612 0.35 +0.8
473,309 + GFF3612 0.35 +0.6
473,310 - GFF3612 0.35 -2.0
473,310 - GFF3612 0.35 +0.2

Or see this region's nucleotide sequence