Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3594 and GFF3595 are separated by 15 nucleotides GFF3595 and GFF3596 are separated by 127 nucleotides
GFF3594 - Outer membrane protein A, at 453,755 to 454,774
GFF3594
GFF3595 - hypothetical protein, at 454,790 to 455,863
GFF3595
GFF3596 - hypothetical protein, at 455,991 to 456,635
GFF3596
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1 at 453.834 kb on + strand at 453.891 kb on + strand, within GFF3594 at 453.891 kb on + strand, within GFF3594 at 453.892 kb on - strand, within GFF3594 at 453.892 kb on - strand, within GFF3594 at 453.892 kb on - strand, within GFF3594 at 455.190 kb on + strand, within GFF3595 at 455.190 kb on + strand, within GFF3595 at 455.191 kb on - strand, within GFF3595 at 455.191 kb on - strand, within GFF3595 at 455.191 kb on - strand, within GFF3595 at 455.191 kb on - strand, within GFF3595 at 455.191 kb on - strand, within GFF3595 at 455.451 kb on + strand, within GFF3595 at 455.451 kb on + strand, within GFF3595 at 455.451 kb on + strand, within GFF3595 at 455.451 kb on + strand, within GFF3595 at 455.452 kb on - strand, within GFF3595 at 455.452 kb on - strand, within GFF3595 at 455.452 kb on - strand, within GFF3595 at 455.626 kb on - strand, within GFF3595 at 455.658 kb on + strand, within GFF3595 at 455.658 kb on + strand, within GFF3595 at 455.658 kb on + strand, within GFF3595 at 455.659 kb on - strand, within GFF3595 at 455.992 kb on + strand at 455.993 kb on - strand at 456.214 kb on + strand, within GFF3596 at 456.214 kb on + strand, within GFF3596 at 456.215 kb on - strand, within GFF3596 at 456.215 kb on - strand, within GFF3596 at 456.223 kb on + strand, within GFF3596 at 456.224 kb on - strand, within GFF3596 at 456.224 kb on - strand, within GFF3596 at 456.224 kb on - strand, within GFF3596
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 453,834 + -0.5 453,891 + GFF3594 0.13 +0.1 453,891 + GFF3594 0.13 -0.8 453,892 - GFF3594 0.13 -0.4 453,892 - GFF3594 0.13 +0.6 453,892 - GFF3594 0.13 -0.7 455,190 + GFF3595 0.37 +0.4 455,190 + GFF3595 0.37 -0.8 455,191 - GFF3595 0.37 -0.0 455,191 - GFF3595 0.37 -0.5 455,191 - GFF3595 0.37 +0.6 455,191 - GFF3595 0.37 -0.5 455,191 - GFF3595 0.37 -0.2 455,451 + GFF3595 0.62 +0.1 455,451 + GFF3595 0.62 -1.7 455,451 + GFF3595 0.62 -0.4 455,451 + GFF3595 0.62 -2.4 455,452 - GFF3595 0.62 +0.2 455,452 - GFF3595 0.62 +1.1 455,452 - GFF3595 0.62 -0.4 455,626 - GFF3595 0.78 +0.2 455,658 + GFF3595 0.81 +0.1 455,658 + GFF3595 0.81 -0.7 455,658 + GFF3595 0.81 +0.6 455,659 - GFF3595 0.81 -0.2 455,992 + -0.2 455,993 - -1.2 456,214 + GFF3596 0.35 -0.4 456,214 + GFF3596 0.35 +0.9 456,215 - GFF3596 0.35 -0.5 456,215 - GFF3596 0.35 -0.4 456,223 + GFF3596 0.36 -0.1 456,224 - GFF3596 0.36 +0.4 456,224 - GFF3596 0.36 +0.1 456,224 - GFF3596 0.36 +0.2
Or see this region's nucleotide sequence