Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3589 and GFF3590 are separated by 164 nucleotides GFF3590 and GFF3591 are separated by 253 nucleotides GFF3591 and GFF3592 overlap by 4 nucleotides GFF3592 and GFF3593 are separated by 14 nucleotides
GFF3589 - Cysteine desulfuration protein SufE, at 449,842 to 450,264
GFF3589
GFF3590 - hypothetical protein, at 450,429 to 450,926
GFF3590
GFF3591 - Sensor histidine kinase RcsC, at 451,180 to 452,655
GFF3591
GFF3592 - hypothetical protein, at 452,652 to 453,338
GFF3592
GFF3593 - hypothetical protein, at 453,353 to 453,694
GFF3593
Position (kb) 451
452
453 Strain fitness (log2 ratio) -1
0
1 at 450.335 kb on + strand at 451.042 kb on - strand at 451.042 kb on - strand at 451.073 kb on - strand at 451.702 kb on - strand, within GFF3591 at 452.015 kb on - strand, within GFF3591 at 452.015 kb on - strand, within GFF3591 at 452.101 kb on + strand, within GFF3591 at 452.102 kb on - strand, within GFF3591 at 452.286 kb on + strand, within GFF3591 at 452.971 kb on - strand, within GFF3592 at 452.971 kb on - strand, within GFF3592 at 453.416 kb on + strand, within GFF3593 at 453.416 kb on + strand, within GFF3593 at 453.416 kb on + strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593 at 453.417 kb on - strand, within GFF3593
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 450,335 + -1.3 451,042 - -0.8 451,042 - -1.0 451,073 - -0.8 451,702 - GFF3591 0.35 +1.2 452,015 - GFF3591 0.57 -0.4 452,015 - GFF3591 0.57 +0.2 452,101 + GFF3591 0.62 +0.1 452,102 - GFF3591 0.62 -0.4 452,286 + GFF3591 0.75 +0.0 452,971 - GFF3592 0.46 +1.4 452,971 - GFF3592 0.46 -0.4 453,416 + GFF3593 0.18 -1.1 453,416 + GFF3593 0.18 -0.2 453,416 + GFF3593 0.18 -0.1 453,417 - GFF3593 0.19 -0.2 453,417 - GFF3593 0.19 +1.0 453,417 - GFF3593 0.19 -0.1 453,417 - GFF3593 0.19 +0.4 453,417 - GFF3593 0.19 -0.4 453,417 - GFF3593 0.19 -1.1 453,417 - GFF3593 0.19 -0.4 453,417 - GFF3593 0.19 +0.7
Or see this region's nucleotide sequence