Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3567 and GFF3568 are separated by 10 nucleotides GFF3568 and GFF3569 are separated by 16 nucleotides GFF3569 and GFF3570 are separated by 259 nucleotides GFF3570 and GFF3571 are separated by 207 nucleotides
GFF3567 - hypothetical protein, at 427,284 to 428,558
GFF3567
GFF3568 - Release factor glutamine methyltransferase, at 428,569 to 429,480
GFF3568
GFF3569 - hypothetical protein, at 429,497 to 429,691
GFF3569
GFF3570 - L-carnitine dehydrogenase, at 429,951 to 430,460
GFF3570
GFF3571 - putative FAD-linked oxidoreductase, at 430,668 to 432,080
GFF3571
Position (kb) 429
430 Strain fitness (log2 ratio) -2
-1
0
1 at 428.734 kb on + strand, within GFF3568 at 428.735 kb on - strand, within GFF3568 at 428.735 kb on - strand, within GFF3568 at 429.248 kb on - strand, within GFF3568 at 429.385 kb on + strand, within GFF3568 at 429.423 kb on + strand at 429.423 kb on + strand at 429.531 kb on + strand, within GFF3569 at 429.532 kb on - strand, within GFF3569 at 429.680 kb on - strand at 429.680 kb on - strand at 429.736 kb on + strand at 429.738 kb on + strand at 429.738 kb on + strand at 429.803 kb on - strand at 429.822 kb on - strand at 429.921 kb on + strand at 429.921 kb on + strand at 429.922 kb on - strand at 430.044 kb on + strand, within GFF3570 at 430.177 kb on + strand, within GFF3570 at 430.177 kb on + strand, within GFF3570 at 430.286 kb on - strand, within GFF3570 at 430.348 kb on + strand, within GFF3570 at 430.349 kb on - strand, within GFF3570 at 430.351 kb on + strand, within GFF3570 at 430.352 kb on - strand, within GFF3570 at 430.352 kb on - strand, within GFF3570 at 430.374 kb on - strand, within GFF3570 at 430.375 kb on + strand, within GFF3570 at 430.376 kb on - strand, within GFF3570 at 430.519 kb on + strand at 430.519 kb on + strand at 430.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 428,734 + GFF3568 0.18 -0.2 428,735 - GFF3568 0.18 -0.9 428,735 - GFF3568 0.18 +0.2 429,248 - GFF3568 0.74 +0.3 429,385 + GFF3568 0.89 +0.2 429,423 + -0.3 429,423 + +0.7 429,531 + GFF3569 0.17 -0.7 429,532 - GFF3569 0.18 -1.0 429,680 - -0.1 429,680 - +0.5 429,736 + +0.0 429,738 + -1.4 429,738 + -2.1 429,803 - +0.4 429,822 - +0.1 429,921 + -0.8 429,921 + -2.2 429,922 - +0.6 430,044 + GFF3570 0.18 +0.1 430,177 + GFF3570 0.44 -0.5 430,177 + GFF3570 0.44 +0.5 430,286 - GFF3570 0.66 +0.6 430,348 + GFF3570 0.78 +0.3 430,349 - GFF3570 0.78 -0.2 430,351 + GFF3570 0.78 -2.1 430,352 - GFF3570 0.79 +0.2 430,352 - GFF3570 0.79 +0.5 430,374 - GFF3570 0.83 -0.2 430,375 + GFF3570 0.83 -1.8 430,376 - GFF3570 0.83 +0.9 430,519 + +0.8 430,519 + -0.5 430,665 + -0.3
Or see this region's nucleotide sequence