Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3560 and GFF3561 are separated by 15 nucleotides GFF3561 and GFF3562 are separated by 163 nucleotides GFF3562 and GFF3563 are separated by 85 nucleotides
GFF3560 - NAD-specific glutamate dehydrogenase, at 415,262 to 420,088
GFF3560
GFF3561 - hypothetical protein, at 420,104 to 421,963
GFF3561
GFF3562 - hypothetical protein, at 422,127 to 422,429
GFF3562
GFF3563 - hypothetical protein, at 422,515 to 423,939
GFF3563
Position (kb) 420
421
422 Strain fitness (log2 ratio) -1
0
1
2 at 419.169 kb on - strand, within GFF3560 at 419.220 kb on - strand, within GFF3560 at 419.387 kb on + strand, within GFF3560 at 419.388 kb on - strand, within GFF3560 at 419.846 kb on + strand at 419.850 kb on - strand at 419.961 kb on - strand at 420.309 kb on + strand, within GFF3561 at 420.342 kb on + strand, within GFF3561 at 420.343 kb on - strand, within GFF3561 at 420.343 kb on - strand, within GFF3561 at 420.438 kb on + strand, within GFF3561 at 420.438 kb on + strand, within GFF3561 at 420.438 kb on + strand, within GFF3561 at 420.523 kb on + strand, within GFF3561 at 420.524 kb on - strand, within GFF3561 at 420.524 kb on - strand, within GFF3561 at 420.774 kb on + strand, within GFF3561 at 420.775 kb on - strand, within GFF3561 at 420.975 kb on + strand, within GFF3561 at 421.116 kb on + strand, within GFF3561 at 421.116 kb on + strand, within GFF3561 at 421.116 kb on + strand, within GFF3561 at 421.116 kb on + strand, within GFF3561 at 421.117 kb on - strand, within GFF3561 at 421.851 kb on + strand at 421.851 kb on + strand at 421.851 kb on + strand at 421.851 kb on + strand at 421.852 kb on - strand at 421.852 kb on - strand at 421.852 kb on - strand at 421.852 kb on - strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.131 kb on - strand at 422.131 kb on - strand at 422.131 kb on - strand at 422.131 kb on - strand at 422.136 kb on + strand at 422.136 kb on + strand at 422.136 kb on + strand at 422.136 kb on + strand at 422.136 kb on + strand at 422.136 kb on + strand at 422.137 kb on - strand at 422.137 kb on - strand at 422.235 kb on + strand, within GFF3562 at 422.436 kb on + strand at 422.534 kb on - strand at 422.534 kb on - strand at 422.632 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 419,169 - GFF3560 0.81 +0.3 419,220 - GFF3560 0.82 -1.2 419,387 + GFF3560 0.85 -1.4 419,388 - GFF3560 0.85 -1.2 419,846 + -0.4 419,850 - -0.4 419,961 - -0.7 420,309 + GFF3561 0.11 +0.3 420,342 + GFF3561 0.13 -0.4 420,343 - GFF3561 0.13 +0.5 420,343 - GFF3561 0.13 -0.2 420,438 + GFF3561 0.18 +0.9 420,438 + GFF3561 0.18 +0.6 420,438 + GFF3561 0.18 -0.8 420,523 + GFF3561 0.23 -0.2 420,524 - GFF3561 0.23 -0.4 420,524 - GFF3561 0.23 +0.9 420,774 + GFF3561 0.36 +0.9 420,775 - GFF3561 0.36 +0.5 420,975 + GFF3561 0.47 +0.2 421,116 + GFF3561 0.54 +0.8 421,116 + GFF3561 0.54 +0.0 421,116 + GFF3561 0.54 -0.2 421,116 + GFF3561 0.54 -0.5 421,117 - GFF3561 0.54 +2.5 421,851 + +0.2 421,851 + +1.1 421,851 + +1.1 421,851 + +0.4 421,852 - +0.0 421,852 - -0.7 421,852 - +0.8 421,852 - +0.5 422,130 + -0.1 422,130 + -0.9 422,130 + +0.5 422,130 + -0.2 422,130 + -1.4 422,130 + +0.3 422,130 + -0.6 422,130 + +0.4 422,131 - -0.2 422,131 - +0.9 422,131 - +1.0 422,131 - -0.3 422,136 + +0.4 422,136 + -1.0 422,136 + +0.8 422,136 + +1.2 422,136 + -0.2 422,136 + -1.0 422,137 - +0.8 422,137 - +0.3 422,235 + GFF3562 0.36 +0.4 422,436 + -0.4 422,534 - +1.0 422,534 - -0.7 422,632 + +0.0
Or see this region's nucleotide sequence