Strain Fitness in Xanthobacter sp. DMC5 around GFF3531

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3530 and GFF3531 are separated by 66 nucleotidesGFF3531 and GFF3532 are separated by 21 nucleotidesGFF3532 and GFF3533 are separated by 11 nucleotides GFF3530 - hypothetical protein, at 384,090 to 386,393 GFF3530 GFF3531 - Ribonuclease D, at 386,460 to 387,608 GFF3531 GFF3532 - Guanylate kinase, at 387,630 to 388,325 GFF3532 GFF3533 - hypothetical protein, at 388,337 to 389,281 GFF3533 Position (kb) 386 387 388Strain fitness (log2 ratio) -2 -1 0 1at 385.695 kb on + strand, within GFF3530at 386.109 kb on + strand, within GFF3530at 386.221 kb on + strandat 386.329 kb on - strandat 386.690 kb on - strand, within GFF3531at 386.808 kb on + strand, within GFF3531at 386.907 kb on + strand, within GFF3531at 386.943 kb on + strand, within GFF3531at 386.944 kb on - strand, within GFF3531at 386.944 kb on - strand, within GFF3531at 387.607 kb on - strandat 388.344 kb on - strandat 388.344 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
385,695 + GFF3530 0.70 -0.3
386,109 + GFF3530 0.88 -0.5
386,221 + +0.2
386,329 - -0.5
386,690 - GFF3531 0.20 -1.1
386,808 + GFF3531 0.30 +0.0
386,907 + GFF3531 0.39 -0.5
386,943 + GFF3531 0.42 +0.3
386,944 - GFF3531 0.42 -0.4
386,944 - GFF3531 0.42 +0.8
387,607 - +0.8
388,344 - +0.6
388,344 - -1.8

Or see this region's nucleotide sequence