Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3521 and GFF3522 overlap by 44 nucleotides GFF3522 and GFF3523 are separated by 290 nucleotides GFF3523 and GFF3524 are separated by 140 nucleotides
GFF3521 - hypothetical protein, at 371,769 to 373,088
GFF3521
GFF3522 - hypothetical protein, at 373,045 to 373,638
GFF3522
GFF3523 - hypothetical protein, at 373,929 to 374,864
GFF3523
GFF3524 - hypothetical protein, at 375,005 to 375,931
GFF3524
Position (kb) 373
374
375 Strain fitness (log2 ratio) -1
0
1 at 373.502 kb on + strand, within GFF3522 at 373.972 kb on + strand at 373.973 kb on - strand at 373.997 kb on - strand at 374.053 kb on + strand, within GFF3523 at 374.053 kb on + strand, within GFF3523 at 374.053 kb on + strand, within GFF3523 at 374.054 kb on - strand, within GFF3523 at 374.230 kb on + strand, within GFF3523 at 374.756 kb on - strand, within GFF3523 at 374.785 kb on + strand at 374.785 kb on + strand at 374.785 kb on + strand at 374.786 kb on - strand at 374.880 kb on - strand at 374.914 kb on + strand at 374.914 kb on + strand at 374.914 kb on + strand at 374.915 kb on - strand at 375.084 kb on + strand at 375.084 kb on + strand at 375.085 kb on - strand at 375.165 kb on + strand, within GFF3524 at 375.393 kb on + strand, within GFF3524 at 375.651 kb on + strand, within GFF3524 at 375.651 kb on + strand, within GFF3524 at 375.651 kb on + strand, within GFF3524 at 375.652 kb on - strand, within GFF3524 at 375.843 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 373,502 + GFF3522 0.77 +0.4 373,972 + -0.2 373,973 - -0.9 373,997 - +0.5 374,053 + GFF3523 0.13 -0.2 374,053 + GFF3523 0.13 +0.0 374,053 + GFF3523 0.13 -1.7 374,054 - GFF3523 0.13 +0.2 374,230 + GFF3523 0.32 -0.3 374,756 - GFF3523 0.88 -0.2 374,785 + -1.5 374,785 + -0.7 374,785 + +1.2 374,786 - -0.1 374,880 - +1.2 374,914 + -0.3 374,914 + -0.2 374,914 + +0.0 374,915 - -0.4 375,084 + +0.0 375,084 + +0.2 375,085 - -0.1 375,165 + GFF3524 0.17 +1.7 375,393 + GFF3524 0.42 -0.4 375,651 + GFF3524 0.70 +1.3 375,651 + GFF3524 0.70 -0.1 375,651 + GFF3524 0.70 -0.2 375,652 - GFF3524 0.70 +0.2 375,843 + +0.3
Or see this region's nucleotide sequence