Strain Fitness in Xanthobacter sp. DMC5 around GFF3514

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3513 and GFF3514 are separated by 165 nucleotidesGFF3514 and GFF3515 are separated by 25 nucleotidesGFF3515 and GFF3516 are separated by 3 nucleotidesGFF3516 and GFF3517 are separated by 27 nucleotides GFF3513 - HTH-type transcriptional activator RhaS, at 365,597 to 366,493 GFF3513 GFF3514 - hypothetical protein, at 366,659 to 367,945 GFF3514 GFF3515 - hypothetical protein, at 367,971 to 368,468 GFF3515 GFF3516 - hypothetical protein, at 368,472 to 368,678 GFF3516 GFF3517 - hypothetical protein, at 368,706 to 368,894 GFF3517 Position (kb) 366 367 368Strain fitness (log2 ratio) -2 -1 0 1 2at 365.771 kb on + strand, within GFF3513at 365.771 kb on + strand, within GFF3513at 365.772 kb on - strand, within GFF3513at 365.804 kb on + strand, within GFF3513at 365.804 kb on + strand, within GFF3513at 365.861 kb on + strand, within GFF3513at 365.862 kb on - strand, within GFF3513at 366.090 kb on - strand, within GFF3513at 366.090 kb on - strand, within GFF3513at 366.090 kb on - strand, within GFF3513at 366.732 kb on + strandat 366.733 kb on - strandat 366.733 kb on - strandat 366.733 kb on - strandat 366.744 kb on + strandat 366.744 kb on + strandat 366.745 kb on - strandat 366.760 kb on - strandat 366.804 kb on + strand, within GFF3514at 366.804 kb on + strand, within GFF3514at 366.804 kb on + strand, within GFF3514at 366.805 kb on - strand, within GFF3514at 366.805 kb on - strand, within GFF3514at 366.936 kb on + strand, within GFF3514at 366.937 kb on - strand, within GFF3514at 366.937 kb on - strand, within GFF3514at 366.937 kb on - strand, within GFF3514at 367.101 kb on + strand, within GFF3514at 367.101 kb on + strand, within GFF3514at 367.101 kb on + strand, within GFF3514at 367.101 kb on + strand, within GFF3514at 367.101 kb on + strand, within GFF3514at 367.102 kb on - strand, within GFF3514at 367.144 kb on + strand, within GFF3514at 367.144 kb on + strand, within GFF3514at 367.144 kb on + strand, within GFF3514at 367.147 kb on - strand, within GFF3514at 367.303 kb on - strand, within GFF3514at 367.303 kb on - strand, within GFF3514at 367.303 kb on - strand, within GFF3514at 367.419 kb on + strand, within GFF3514at 367.420 kb on - strand, within GFF3514at 367.509 kb on + strand, within GFF3514at 367.521 kb on + strand, within GFF3514at 367.602 kb on + strand, within GFF3514at 367.602 kb on + strand, within GFF3514at 367.602 kb on + strand, within GFF3514at 367.602 kb on + strand, within GFF3514at 367.603 kb on - strand, within GFF3514at 367.603 kb on - strand, within GFF3514at 367.606 kb on + strand, within GFF3514at 367.812 kb on + strand, within GFF3514at 367.812 kb on + strand, within GFF3514at 367.812 kb on + strand, within GFF3514at 367.813 kb on - strand, within GFF3514at 367.956 kb on + strandat 368.317 kb on + strand, within GFF3515at 368.318 kb on - strand, within GFF3515at 368.318 kb on - strand, within GFF3515at 368.318 kb on - strand, within GFF3515at 368.324 kb on + strand, within GFF3515at 368.324 kb on + strand, within GFF3515at 368.324 kb on + strand, within GFF3515at 368.324 kb on + strand, within GFF3515at 368.324 kb on + strand, within GFF3515at 368.324 kb on + strand, within GFF3515at 368.325 kb on - strand, within GFF3515at 368.325 kb on - strand, within GFF3515at 368.422 kb on + strandat 368.422 kb on + strandat 368.423 kb on - strandat 368.889 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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365,771 + GFF3513 0.19 -0.5
365,771 + GFF3513 0.19 +0.6
365,772 - GFF3513 0.20 +0.2
365,804 + GFF3513 0.23 -0.8
365,804 + GFF3513 0.23 +1.0
365,861 + GFF3513 0.29 +0.2
365,862 - GFF3513 0.30 +1.7
366,090 - GFF3513 0.55 -0.1
366,090 - GFF3513 0.55 -0.0
366,090 - GFF3513 0.55 -0.2
366,732 + +0.5
366,733 - +0.2
366,733 - +0.8
366,733 - +1.2
366,744 + -0.8
366,744 + +0.6
366,745 - +0.5
366,760 - -0.0
366,804 + GFF3514 0.11 +1.2
366,804 + GFF3514 0.11 -0.5
366,804 + GFF3514 0.11 +0.6
366,805 - GFF3514 0.11 -0.1
366,805 - GFF3514 0.11 -1.7
366,936 + GFF3514 0.22 +0.3
366,937 - GFF3514 0.22 +0.3
366,937 - GFF3514 0.22 +0.2
366,937 - GFF3514 0.22 +0.4
367,101 + GFF3514 0.34 -1.1
367,101 + GFF3514 0.34 +0.4
367,101 + GFF3514 0.34 +0.5
367,101 + GFF3514 0.34 +0.7
367,101 + GFF3514 0.34 +0.1
367,102 - GFF3514 0.34 -0.2
367,144 + GFF3514 0.38 +0.5
367,144 + GFF3514 0.38 -0.3
367,144 + GFF3514 0.38 +0.1
367,147 - GFF3514 0.38 +0.3
367,303 - GFF3514 0.50 +2.2
367,303 - GFF3514 0.50 -0.1
367,303 - GFF3514 0.50 +0.1
367,419 + GFF3514 0.59 +0.0
367,420 - GFF3514 0.59 -0.2
367,509 + GFF3514 0.66 +0.0
367,521 + GFF3514 0.67 -0.3
367,602 + GFF3514 0.73 -0.8
367,602 + GFF3514 0.73 -0.5
367,602 + GFF3514 0.73 -2.5
367,602 + GFF3514 0.73 -1.0
367,603 - GFF3514 0.73 -0.5
367,603 - GFF3514 0.73 +0.9
367,606 + GFF3514 0.74 -0.4
367,812 + GFF3514 0.90 -2.0
367,812 + GFF3514 0.90 -0.4
367,812 + GFF3514 0.90 +1.3
367,813 - GFF3514 0.90 +0.2
367,956 + -0.4
368,317 + GFF3515 0.69 +0.1
368,318 - GFF3515 0.70 +0.6
368,318 - GFF3515 0.70 +0.8
368,318 - GFF3515 0.70 +0.1
368,324 + GFF3515 0.71 -0.5
368,324 + GFF3515 0.71 -0.4
368,324 + GFF3515 0.71 -0.1
368,324 + GFF3515 0.71 -0.7
368,324 + GFF3515 0.71 +0.2
368,324 + GFF3515 0.71 +0.7
368,325 - GFF3515 0.71 +0.0
368,325 - GFF3515 0.71 -0.4
368,422 + -0.3
368,422 + -0.1
368,423 - +0.8
368,889 - -0.5

Or see this region's nucleotide sequence