Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3511 and GFF3512 are separated by 1 nucleotides GFF3512 and GFF3513 are separated by 78 nucleotides GFF3513 and GFF3514 are separated by 165 nucleotides
GFF3511 - hypothetical protein, at 363,886 to 364,650
GFF3511
GFF3512 - hypothetical protein, at 364,652 to 365,518
GFF3512
GFF3513 - HTH-type transcriptional activator RhaS, at 365,597 to 366,493
GFF3513
GFF3514 - hypothetical protein, at 366,659 to 367,945
GFF3514
Position (kb) 365
366
367 Strain fitness (log2 ratio) -1
0
1
2 at 365.025 kb on - strand, within GFF3512 at 365.025 kb on - strand, within GFF3512 at 365.093 kb on + strand, within GFF3512 at 365.094 kb on - strand, within GFF3512 at 365.094 kb on - strand, within GFF3512 at 365.094 kb on - strand, within GFF3512 at 365.258 kb on - strand, within GFF3512 at 365.298 kb on - strand, within GFF3512 at 365.298 kb on - strand, within GFF3512 at 365.298 kb on - strand, within GFF3512 at 365.420 kb on + strand, within GFF3512 at 365.421 kb on - strand, within GFF3512 at 365.421 kb on - strand, within GFF3512 at 365.771 kb on + strand, within GFF3513 at 365.771 kb on + strand, within GFF3513 at 365.772 kb on - strand, within GFF3513 at 365.804 kb on + strand, within GFF3513 at 365.804 kb on + strand, within GFF3513 at 365.861 kb on + strand, within GFF3513 at 365.862 kb on - strand, within GFF3513 at 366.090 kb on - strand, within GFF3513 at 366.090 kb on - strand, within GFF3513 at 366.090 kb on - strand, within GFF3513 at 366.732 kb on + strand at 366.733 kb on - strand at 366.733 kb on - strand at 366.733 kb on - strand at 366.744 kb on + strand at 366.744 kb on + strand at 366.745 kb on - strand at 366.760 kb on - strand at 366.804 kb on + strand, within GFF3514 at 366.804 kb on + strand, within GFF3514 at 366.804 kb on + strand, within GFF3514 at 366.805 kb on - strand, within GFF3514 at 366.805 kb on - strand, within GFF3514 at 366.936 kb on + strand, within GFF3514 at 366.937 kb on - strand, within GFF3514 at 366.937 kb on - strand, within GFF3514 at 366.937 kb on - strand, within GFF3514 at 367.101 kb on + strand, within GFF3514 at 367.101 kb on + strand, within GFF3514 at 367.101 kb on + strand, within GFF3514 at 367.101 kb on + strand, within GFF3514 at 367.101 kb on + strand, within GFF3514 at 367.102 kb on - strand, within GFF3514 at 367.144 kb on + strand, within GFF3514 at 367.144 kb on + strand, within GFF3514 at 367.144 kb on + strand, within GFF3514 at 367.147 kb on - strand, within GFF3514 at 367.303 kb on - strand, within GFF3514 at 367.303 kb on - strand, within GFF3514 at 367.303 kb on - strand, within GFF3514 at 367.419 kb on + strand, within GFF3514 at 367.420 kb on - strand, within GFF3514
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 365,025 - GFF3512 0.43 +0.8 365,025 - GFF3512 0.43 +1.2 365,093 + GFF3512 0.51 +0.6 365,094 - GFF3512 0.51 +0.2 365,094 - GFF3512 0.51 +0.8 365,094 - GFF3512 0.51 -0.2 365,258 - GFF3512 0.70 +0.5 365,298 - GFF3512 0.75 +0.4 365,298 - GFF3512 0.75 -0.3 365,298 - GFF3512 0.75 -0.2 365,420 + GFF3512 0.89 -0.1 365,421 - GFF3512 0.89 -0.3 365,421 - GFF3512 0.89 +0.2 365,771 + GFF3513 0.19 -0.5 365,771 + GFF3513 0.19 +0.6 365,772 - GFF3513 0.20 +0.2 365,804 + GFF3513 0.23 -0.8 365,804 + GFF3513 0.23 +1.0 365,861 + GFF3513 0.29 +0.2 365,862 - GFF3513 0.30 +1.7 366,090 - GFF3513 0.55 -0.1 366,090 - GFF3513 0.55 -0.0 366,090 - GFF3513 0.55 -0.2 366,732 + +0.5 366,733 - +0.2 366,733 - +0.8 366,733 - +1.2 366,744 + -0.8 366,744 + +0.6 366,745 - +0.5 366,760 - -0.0 366,804 + GFF3514 0.11 +1.2 366,804 + GFF3514 0.11 -0.5 366,804 + GFF3514 0.11 +0.6 366,805 - GFF3514 0.11 -0.1 366,805 - GFF3514 0.11 -1.7 366,936 + GFF3514 0.22 +0.3 366,937 - GFF3514 0.22 +0.3 366,937 - GFF3514 0.22 +0.2 366,937 - GFF3514 0.22 +0.4 367,101 + GFF3514 0.34 -1.1 367,101 + GFF3514 0.34 +0.4 367,101 + GFF3514 0.34 +0.5 367,101 + GFF3514 0.34 +0.7 367,101 + GFF3514 0.34 +0.1 367,102 - GFF3514 0.34 -0.2 367,144 + GFF3514 0.38 +0.5 367,144 + GFF3514 0.38 -0.3 367,144 + GFF3514 0.38 +0.1 367,147 - GFF3514 0.38 +0.3 367,303 - GFF3514 0.50 +2.2 367,303 - GFF3514 0.50 -0.1 367,303 - GFF3514 0.50 +0.1 367,419 + GFF3514 0.59 +0.0 367,420 - GFF3514 0.59 -0.2
Or see this region's nucleotide sequence