Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3479 and GFF3480 are separated by 402 nucleotides GFF3480 and GFF3481 are separated by 90 nucleotides GFF3481 and GFF3482 are separated by 0 nucleotides
GFF3479 - Aminomethyltransferase, at 332,846 to 333,976
GFF3479
GFF3480 - putative acyl-CoA dehydrogenase fadE25, at 334,379 to 335,782
GFF3480
GFF3481 - FMN reductase (NADH) NtaB, at 335,873 to 336,421
GFF3481
GFF3482 - Aminomethyltransferase, at 336,422 to 338,716
GFF3482
Position (kb) 334
335
336 Strain fitness (log2 ratio) -1
0
1 at 333.384 kb on + strand, within GFF3479 at 333.385 kb on - strand, within GFF3479 at 333.402 kb on + strand, within GFF3479 at 333.403 kb on - strand, within GFF3479 at 333.403 kb on - strand, within GFF3479 at 333.462 kb on + strand, within GFF3479 at 333.463 kb on - strand, within GFF3479 at 333.467 kb on + strand, within GFF3479 at 333.467 kb on + strand, within GFF3479 at 333.467 kb on + strand, within GFF3479 at 333.468 kb on - strand, within GFF3479 at 333.468 kb on - strand, within GFF3479 at 333.654 kb on + strand, within GFF3479 at 333.654 kb on + strand, within GFF3479 at 333.737 kb on - strand, within GFF3479 at 333.855 kb on + strand, within GFF3479 at 333.856 kb on - strand, within GFF3479 at 333.871 kb on - strand at 334.137 kb on + strand at 334.137 kb on + strand at 334.226 kb on + strand at 334.227 kb on - strand at 334.378 kb on + strand at 334.379 kb on - strand at 334.541 kb on + strand, within GFF3480 at 334.541 kb on + strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.547 kb on + strand, within GFF3480 at 334.673 kb on + strand, within GFF3480 at 334.701 kb on - strand, within GFF3480 at 334.847 kb on + strand, within GFF3480 at 334.940 kb on + strand, within GFF3480 at 334.979 kb on + strand, within GFF3480 at 334.979 kb on + strand, within GFF3480 at 334.979 kb on + strand, within GFF3480 at 334.980 kb on - strand, within GFF3480 at 335.303 kb on + strand, within GFF3480 at 335.303 kb on + strand, within GFF3480 at 335.304 kb on - strand, within GFF3480 at 335.304 kb on - strand, within GFF3480 at 335.352 kb on - strand, within GFF3480 at 335.384 kb on - strand, within GFF3480 at 335.384 kb on - strand, within GFF3480 at 335.558 kb on + strand, within GFF3480 at 335.559 kb on - strand, within GFF3480 at 335.869 kb on + strand at 335.869 kb on + strand at 335.870 kb on - strand at 335.870 kb on - strand at 335.900 kb on + strand at 335.900 kb on + strand at 335.900 kb on + strand at 335.900 kb on + strand at 335.901 kb on - strand at 335.901 kb on - strand at 335.901 kb on - strand at 335.901 kb on - strand at 335.901 kb on - strand at 336.132 kb on - strand, within GFF3481 at 336.132 kb on - strand, within GFF3481 at 336.293 kb on + strand, within GFF3481 at 336.293 kb on + strand, within GFF3481 at 336.294 kb on - strand, within GFF3481 at 336.294 kb on - strand, within GFF3481 at 336.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 333,384 + GFF3479 0.48 -0.7 333,385 - GFF3479 0.48 +1.2 333,402 + GFF3479 0.49 -0.2 333,403 - GFF3479 0.49 -0.7 333,403 - GFF3479 0.49 -0.2 333,462 + GFF3479 0.54 -0.7 333,463 - GFF3479 0.55 +0.7 333,467 + GFF3479 0.55 +0.9 333,467 + GFF3479 0.55 +0.1 333,467 + GFF3479 0.55 +0.0 333,468 - GFF3479 0.55 +0.6 333,468 - GFF3479 0.55 +0.6 333,654 + GFF3479 0.71 +0.4 333,654 + GFF3479 0.71 +1.3 333,737 - GFF3479 0.79 +1.1 333,855 + GFF3479 0.89 -0.5 333,856 - GFF3479 0.89 -0.3 333,871 - +0.2 334,137 + +0.1 334,137 + -0.4 334,226 + +0.0 334,227 - +0.2 334,378 + +0.0 334,379 - +0.7 334,541 + GFF3480 0.12 -0.4 334,541 + GFF3480 0.12 -0.2 334,542 - GFF3480 0.12 +1.4 334,542 - GFF3480 0.12 +0.3 334,542 - GFF3480 0.12 +0.3 334,542 - GFF3480 0.12 +0.0 334,542 - GFF3480 0.12 -0.5 334,542 - GFF3480 0.12 +1.3 334,547 + GFF3480 0.12 -0.1 334,673 + GFF3480 0.21 +0.8 334,701 - GFF3480 0.23 +0.3 334,847 + GFF3480 0.33 +0.4 334,940 + GFF3480 0.40 +0.1 334,979 + GFF3480 0.43 -0.2 334,979 + GFF3480 0.43 -0.3 334,979 + GFF3480 0.43 -0.2 334,980 - GFF3480 0.43 -0.3 335,303 + GFF3480 0.66 -0.1 335,303 + GFF3480 0.66 +0.6 335,304 - GFF3480 0.66 -0.2 335,304 - GFF3480 0.66 -0.1 335,352 - GFF3480 0.69 +0.3 335,384 - GFF3480 0.72 -0.0 335,384 - GFF3480 0.72 +0.4 335,558 + GFF3480 0.84 +0.1 335,559 - GFF3480 0.84 -0.5 335,869 + -0.5 335,869 + -0.6 335,870 - +0.4 335,870 - -0.6 335,900 + +0.1 335,900 + -0.6 335,900 + +0.4 335,900 + +0.2 335,901 - +0.1 335,901 - +0.6 335,901 - -0.7 335,901 - +1.1 335,901 - -1.0 336,132 - GFF3481 0.47 -1.0 336,132 - GFF3481 0.47 -0.5 336,293 + GFF3481 0.77 +0.2 336,293 + GFF3481 0.77 +1.5 336,294 - GFF3481 0.77 +0.3 336,294 - GFF3481 0.77 +0.2 336,372 - +1.3
Or see this region's nucleotide sequence