Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3477 and GFF3478 are separated by 270 nucleotides GFF3478 and GFF3479 are separated by 119 nucleotides
GFF3477 - hypothetical protein, at 330,279 to 331,490
GFF3477
GFF3478 - Putative ring-cleaving dioxygenase MhqA, at 331,761 to 332,726
GFF3478
GFF3479 - Aminomethyltransferase, at 332,846 to 333,976
GFF3479
Position (kb) 331
332
333 Strain fitness (log2 ratio) -1
0
1
2 at 330.786 kb on - strand, within GFF3477 at 330.786 kb on - strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.899 kb on - strand, within GFF3477 at 330.986 kb on - strand, within GFF3477 at 331.013 kb on - strand, within GFF3477 at 331.501 kb on + strand at 331.502 kb on - strand at 331.502 kb on - strand at 331.836 kb on + strand at 331.837 kb on - strand at 331.852 kb on - strand at 331.914 kb on + strand, within GFF3478 at 331.926 kb on + strand, within GFF3478 at 331.927 kb on - strand, within GFF3478 at 332.056 kb on - strand, within GFF3478 at 332.328 kb on + strand, within GFF3478 at 332.328 kb on + strand, within GFF3478 at 332.328 kb on + strand, within GFF3478 at 332.488 kb on - strand, within GFF3478 at 332.488 kb on - strand, within GFF3478 at 332.553 kb on + strand, within GFF3478 at 332.554 kb on - strand, within GFF3478 at 332.554 kb on - strand, within GFF3478 at 332.892 kb on + strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 333.021 kb on + strand, within GFF3479 at 333.021 kb on + strand, within GFF3479 at 333.022 kb on - strand, within GFF3479 at 333.022 kb on - strand, within GFF3479 at 333.022 kb on - strand, within GFF3479 at 333.022 kb on - strand, within GFF3479 at 333.384 kb on + strand, within GFF3479 at 333.385 kb on - strand, within GFF3479 at 333.402 kb on + strand, within GFF3479 at 333.403 kb on - strand, within GFF3479 at 333.403 kb on - strand, within GFF3479 at 333.462 kb on + strand, within GFF3479 at 333.463 kb on - strand, within GFF3479 at 333.467 kb on + strand, within GFF3479 at 333.467 kb on + strand, within GFF3479 at 333.467 kb on + strand, within GFF3479 at 333.468 kb on - strand, within GFF3479 at 333.468 kb on - strand, within GFF3479 at 333.654 kb on + strand, within GFF3479 at 333.654 kb on + strand, within GFF3479
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 330,786 - GFF3477 0.42 -0.2 330,786 - GFF3477 0.42 -0.8 330,892 + GFF3477 0.51 +1.3 330,892 + GFF3477 0.51 +0.5 330,892 + GFF3477 0.51 +0.2 330,892 + GFF3477 0.51 +0.1 330,892 + GFF3477 0.51 +1.3 330,898 + GFF3477 0.51 +0.3 330,898 + GFF3477 0.51 +0.4 330,898 + GFF3477 0.51 -0.1 330,898 + GFF3477 0.51 +0.4 330,898 + GFF3477 0.51 -0.0 330,899 - GFF3477 0.51 +0.2 330,986 - GFF3477 0.58 -0.5 331,013 - GFF3477 0.61 +0.2 331,501 + +0.5 331,502 - +0.8 331,502 - -0.5 331,836 + +0.0 331,837 - +1.1 331,852 - +0.0 331,914 + GFF3478 0.16 +1.2 331,926 + GFF3478 0.17 -0.0 331,927 - GFF3478 0.17 -0.3 332,056 - GFF3478 0.31 +0.3 332,328 + GFF3478 0.59 -0.4 332,328 + GFF3478 0.59 -0.1 332,328 + GFF3478 0.59 -0.2 332,488 - GFF3478 0.75 +0.6 332,488 - GFF3478 0.75 +0.8 332,553 + GFF3478 0.82 +0.3 332,554 - GFF3478 0.82 -0.0 332,554 - GFF3478 0.82 +0.9 332,892 + -0.2 332,893 - +0.8 332,893 - +0.3 332,893 - +0.9 332,893 - +0.4 332,893 - -0.3 332,893 - +0.2 332,893 - -0.7 332,893 - -0.1 333,021 + GFF3479 0.15 +0.5 333,021 + GFF3479 0.15 +2.2 333,022 - GFF3479 0.16 -0.1 333,022 - GFF3479 0.16 -1.1 333,022 - GFF3479 0.16 +0.6 333,022 - GFF3479 0.16 -0.4 333,384 + GFF3479 0.48 -0.7 333,385 - GFF3479 0.48 +1.2 333,402 + GFF3479 0.49 -0.2 333,403 - GFF3479 0.49 -0.7 333,403 - GFF3479 0.49 -0.2 333,462 + GFF3479 0.54 -0.7 333,463 - GFF3479 0.55 +0.7 333,467 + GFF3479 0.55 +0.9 333,467 + GFF3479 0.55 +0.1 333,467 + GFF3479 0.55 +0.0 333,468 - GFF3479 0.55 +0.6 333,468 - GFF3479 0.55 +0.6 333,654 + GFF3479 0.71 +0.4 333,654 + GFF3479 0.71 +1.3
Or see this region's nucleotide sequence