Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3448 and GFF3449 are separated by 410 nucleotides GFF3449 and GFF3450 are separated by 64 nucleotides GFF3450 and GFF3451 are separated by 8 nucleotides
GFF3448 - hypothetical protein, at 298,531 to 299,577
GFF3448
GFF3449 - HTH-type transcriptional regulator LutR, at 299,988 to 300,728
GFF3449
GFF3450 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 300,793 to 301,548
GFF3450
GFF3451 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 301,557 to 302,318
GFF3451
Position (kb) 299
300
301 Strain fitness (log2 ratio) -1
0
1 at 299.089 kb on + strand, within GFF3448 at 299.089 kb on + strand, within GFF3448 at 299.278 kb on + strand, within GFF3448 at 299.278 kb on + strand, within GFF3448 at 299.278 kb on + strand, within GFF3448 at 299.278 kb on + strand, within GFF3448 at 299.278 kb on + strand, within GFF3448 at 299.279 kb on - strand, within GFF3448 at 299.279 kb on - strand, within GFF3448 at 299.402 kb on - strand, within GFF3448 at 299.402 kb on - strand, within GFF3448 at 299.522 kb on - strand at 299.700 kb on + strand at 299.769 kb on + strand at 299.828 kb on + strand at 299.829 kb on - strand at 299.848 kb on + strand at 300.002 kb on - strand at 300.211 kb on + strand, within GFF3449 at 300.565 kb on + strand, within GFF3449 at 300.566 kb on - strand, within GFF3449 at 300.566 kb on - strand, within GFF3449 at 300.566 kb on - strand, within GFF3449 at 300.687 kb on - strand at 300.804 kb on + strand at 300.806 kb on + strand at 300.806 kb on + strand at 300.806 kb on + strand at 300.807 kb on - strand at 300.921 kb on + strand, within GFF3450 at 300.921 kb on + strand, within GFF3450 at 301.175 kb on + strand, within GFF3450 at 301.176 kb on - strand, within GFF3450 at 301.180 kb on + strand, within GFF3450 at 301.217 kb on + strand, within GFF3450 at 301.217 kb on + strand, within GFF3450 at 301.218 kb on - strand, within GFF3450
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 299,089 + GFF3448 0.53 +0.5 299,089 + GFF3448 0.53 +1.3 299,278 + GFF3448 0.71 +0.1 299,278 + GFF3448 0.71 +0.5 299,278 + GFF3448 0.71 +0.7 299,278 + GFF3448 0.71 +0.4 299,278 + GFF3448 0.71 -1.1 299,279 - GFF3448 0.71 +0.5 299,279 - GFF3448 0.71 -0.3 299,402 - GFF3448 0.83 +0.6 299,402 - GFF3448 0.83 -1.1 299,522 - +0.7 299,700 + -0.4 299,769 + -0.4 299,828 + +0.5 299,829 - -0.3 299,848 + -0.5 300,002 - -0.3 300,211 + GFF3449 0.30 -0.8 300,565 + GFF3449 0.78 -0.7 300,566 - GFF3449 0.78 -0.8 300,566 - GFF3449 0.78 -0.6 300,566 - GFF3449 0.78 +0.0 300,687 - -0.5 300,804 + -0.3 300,806 + -0.5 300,806 + +0.2 300,806 + +0.0 300,807 - -1.2 300,921 + GFF3450 0.17 -0.5 300,921 + GFF3450 0.17 -0.5 301,175 + GFF3450 0.51 -0.4 301,176 - GFF3450 0.51 +0.1 301,180 + GFF3450 0.51 +0.2 301,217 + GFF3450 0.56 +0.1 301,217 + GFF3450 0.56 -0.1 301,218 - GFF3450 0.56 +0.4
Or see this region's nucleotide sequence