Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3438 and GFF3439 are separated by 204 nucleotides GFF3439 and GFF3440 overlap by 1 nucleotides GFF3440 and GFF3441 are separated by 3 nucleotides
GFF3438 - HTH-type transcriptional repressor NagR, at 290,002 to 290,742
GFF3438
GFF3439 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG, at 290,947 to 291,444
GFF3439
GFF3440 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH, at 291,444 to 292,070
GFF3440
GFF3441 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI, at 292,074 to 293,291
GFF3441
Position (kb) 291
292
293 Strain fitness (log2 ratio) -1
0
1 at 290.848 kb on + strand at 291.040 kb on + strand, within GFF3439 at 291.041 kb on - strand, within GFF3439 at 291.244 kb on + strand, within GFF3439 at 291.244 kb on + strand, within GFF3439 at 291.406 kb on + strand at 291.636 kb on + strand, within GFF3440 at 291.982 kb on + strand, within GFF3440 at 291.982 kb on + strand, within GFF3440 at 291.983 kb on - strand, within GFF3440 at 291.983 kb on - strand, within GFF3440 at 292.077 kb on + strand at 292.077 kb on + strand at 292.077 kb on + strand at 292.077 kb on + strand at 292.078 kb on - strand at 292.078 kb on - strand at 292.078 kb on - strand at 292.078 kb on - strand at 292.443 kb on + strand, within GFF3441 at 292.819 kb on - strand, within GFF3441 at 292.819 kb on - strand, within GFF3441 at 292.837 kb on - strand, within GFF3441 at 293.010 kb on + strand, within GFF3441
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 290,848 + -0.3 291,040 + GFF3439 0.19 +0.8 291,041 - GFF3439 0.19 +0.3 291,244 + GFF3439 0.60 -0.8 291,244 + GFF3439 0.60 +0.4 291,406 + -0.6 291,636 + GFF3440 0.31 -0.8 291,982 + GFF3440 0.86 -0.2 291,982 + GFF3440 0.86 -0.6 291,983 - GFF3440 0.86 -0.3 291,983 - GFF3440 0.86 -1.6 292,077 + -0.1 292,077 + -0.1 292,077 + -0.7 292,077 + -0.2 292,078 - +1.0 292,078 - +0.0 292,078 - -0.1 292,078 - +0.7 292,443 + GFF3441 0.30 -0.3 292,819 - GFF3441 0.61 -1.4 292,819 - GFF3441 0.61 -0.1 292,837 - GFF3441 0.63 +0.2 293,010 + GFF3441 0.77 -0.5
Or see this region's nucleotide sequence