Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3406 and GFF3407 are separated by 310 nucleotides GFF3407 and GFF3408 are separated by 34 nucleotides GFF3408 and GFF3409 overlap by 4 nucleotides
GFF3406 - D-methionine-binding lipoprotein MetQ, at 250,900 to 251,727
GFF3406
GFF3407 - FMNH(2)-dependent dimethylsulfone monooxygenase, at 252,038 to 253,120
GFF3407
GFF3408 - Putative aliphatic sulfonates transport permease protein SsuC, at 253,155 to 254,030
GFF3408
GFF3409 - Aliphatic sulfonates import ATP-binding protein SsuB, at 254,027 to 254,728
GFF3409
Position (kb) 252
253
254 Strain fitness (log2 ratio) -2
-1
0
1 at 251.039 kb on + strand, within GFF3406 at 251.039 kb on + strand, within GFF3406 at 251.039 kb on + strand, within GFF3406 at 251.105 kb on + strand, within GFF3406 at 251.106 kb on - strand, within GFF3406 at 251.106 kb on - strand, within GFF3406 at 251.111 kb on + strand, within GFF3406 at 251.111 kb on + strand, within GFF3406 at 251.111 kb on + strand, within GFF3406 at 251.111 kb on + strand, within GFF3406 at 251.111 kb on + strand, within GFF3406 at 251.111 kb on + strand, within GFF3406 at 251.111 kb on + strand, within GFF3406 at 251.112 kb on - strand, within GFF3406 at 251.112 kb on - strand, within GFF3406 at 251.112 kb on - strand, within GFF3406 at 251.112 kb on - strand, within GFF3406 at 251.229 kb on - strand, within GFF3406 at 251.358 kb on - strand, within GFF3406 at 251.358 kb on - strand, within GFF3406 at 251.369 kb on + strand, within GFF3406 at 251.370 kb on - strand, within GFF3406 at 251.999 kb on + strand at 252.000 kb on - strand at 252.000 kb on - strand at 252.173 kb on + strand, within GFF3407 at 252.308 kb on + strand, within GFF3407 at 252.308 kb on + strand, within GFF3407 at 252.309 kb on - strand, within GFF3407 at 252.309 kb on - strand, within GFF3407 at 252.309 kb on - strand, within GFF3407 at 252.309 kb on - strand, within GFF3407 at 252.315 kb on - strand, within GFF3407 at 252.456 kb on - strand, within GFF3407 at 252.456 kb on - strand, within GFF3407 at 252.461 kb on + strand, within GFF3407 at 252.462 kb on - strand, within GFF3407 at 252.593 kb on + strand, within GFF3407 at 252.650 kb on + strand, within GFF3407 at 252.651 kb on - strand, within GFF3407 at 252.651 kb on - strand, within GFF3407 at 252.651 kb on - strand, within GFF3407 at 252.681 kb on + strand, within GFF3407 at 252.681 kb on + strand, within GFF3407 at 252.682 kb on - strand, within GFF3407 at 252.791 kb on + strand, within GFF3407 at 252.794 kb on + strand, within GFF3407 at 252.795 kb on - strand, within GFF3407 at 252.947 kb on + strand, within GFF3407 at 252.948 kb on - strand, within GFF3407 at 252.948 kb on - strand, within GFF3407 at 253.341 kb on + strand, within GFF3408 at 253.341 kb on + strand, within GFF3408 at 253.341 kb on + strand, within GFF3408 at 253.342 kb on - strand, within GFF3408 at 253.342 kb on - strand, within GFF3408 at 253.662 kb on + strand, within GFF3408 at 253.663 kb on - strand, within GFF3408 at 253.935 kb on + strand, within GFF3408 at 253.935 kb on + strand, within GFF3408 at 253.935 kb on + strand, within GFF3408 at 253.936 kb on - strand, within GFF3408
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 251,039 + GFF3406 0.17 -2.3 251,039 + GFF3406 0.17 +0.6 251,039 + GFF3406 0.17 -0.6 251,105 + GFF3406 0.25 -1.3 251,106 - GFF3406 0.25 -0.9 251,106 - GFF3406 0.25 -0.7 251,111 + GFF3406 0.25 -0.1 251,111 + GFF3406 0.25 +0.2 251,111 + GFF3406 0.25 +0.2 251,111 + GFF3406 0.25 +0.3 251,111 + GFF3406 0.25 -0.2 251,111 + GFF3406 0.25 -0.3 251,111 + GFF3406 0.25 -0.2 251,112 - GFF3406 0.26 -1.2 251,112 - GFF3406 0.26 -0.1 251,112 - GFF3406 0.26 +0.4 251,112 - GFF3406 0.26 -0.3 251,229 - GFF3406 0.40 +0.2 251,358 - GFF3406 0.55 -0.2 251,358 - GFF3406 0.55 +0.1 251,369 + GFF3406 0.57 +0.0 251,370 - GFF3406 0.57 +1.0 251,999 + -0.1 252,000 - -0.7 252,000 - -0.8 252,173 + GFF3407 0.12 -0.4 252,308 + GFF3407 0.25 -0.9 252,308 + GFF3407 0.25 +0.7 252,309 - GFF3407 0.25 -0.0 252,309 - GFF3407 0.25 -1.1 252,309 - GFF3407 0.25 +0.3 252,309 - GFF3407 0.25 +0.1 252,315 - GFF3407 0.26 -1.2 252,456 - GFF3407 0.39 -0.9 252,456 - GFF3407 0.39 +1.0 252,461 + GFF3407 0.39 +1.1 252,462 - GFF3407 0.39 -1.1 252,593 + GFF3407 0.51 -1.1 252,650 + GFF3407 0.57 +0.5 252,651 - GFF3407 0.57 -0.1 252,651 - GFF3407 0.57 +0.1 252,651 - GFF3407 0.57 -1.0 252,681 + GFF3407 0.59 +0.9 252,681 + GFF3407 0.59 +0.5 252,682 - GFF3407 0.59 -0.5 252,791 + GFF3407 0.70 -0.6 252,794 + GFF3407 0.70 +0.0 252,795 - GFF3407 0.70 -0.8 252,947 + GFF3407 0.84 +1.0 252,948 - GFF3407 0.84 -0.3 252,948 - GFF3407 0.84 -0.9 253,341 + GFF3408 0.21 -0.1 253,341 + GFF3408 0.21 -0.2 253,341 + GFF3408 0.21 -0.7 253,342 - GFF3408 0.21 +0.8 253,342 - GFF3408 0.21 -0.1 253,662 + GFF3408 0.58 -1.5 253,663 - GFF3408 0.58 -0.9 253,935 + GFF3408 0.89 +0.4 253,935 + GFF3408 0.89 +0.3 253,935 + GFF3408 0.89 -0.7 253,936 - GFF3408 0.89 -0.5
Or see this region's nucleotide sequence