Strain Fitness in Xanthobacter sp. DMC5 around GFF3405

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3404 and GFF3405 are separated by 14 nucleotidesGFF3405 and GFF3406 are separated by 35 nucleotides GFF3404 - Dimethyl-sulfide monooxygenase, at 248,223 to 249,638 GFF3404 GFF3405 - putative FMNH2-dependent monooxygenase SfnC, at 249,653 to 250,864 GFF3405 GFF3406 - D-methionine-binding lipoprotein MetQ, at 250,900 to 251,727 GFF3406 Position (kb) 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1at 248.719 kb on + strand, within GFF3404at 248.719 kb on + strand, within GFF3404at 248.719 kb on + strand, within GFF3404at 248.719 kb on + strand, within GFF3404at 248.719 kb on + strand, within GFF3404at 248.720 kb on - strand, within GFF3404at 248.720 kb on - strand, within GFF3404at 248.720 kb on - strand, within GFF3404at 248.720 kb on - strand, within GFF3404at 248.728 kb on + strand, within GFF3404at 248.728 kb on + strand, within GFF3404at 248.951 kb on - strand, within GFF3404at 248.951 kb on - strand, within GFF3404at 249.007 kb on + strand, within GFF3404at 249.008 kb on - strand, within GFF3404at 249.010 kb on + strand, within GFF3404at 249.011 kb on - strand, within GFF3404at 249.011 kb on - strand, within GFF3404at 249.118 kb on + strand, within GFF3404at 249.287 kb on - strand, within GFF3404at 249.287 kb on - strand, within GFF3404at 249.299 kb on - strand, within GFF3404at 249.299 kb on - strand, within GFF3404at 249.428 kb on - strand, within GFF3404at 249.428 kb on - strand, within GFF3404at 249.436 kb on + strand, within GFF3404at 249.437 kb on - strand, within GFF3404at 249.437 kb on - strand, within GFF3404at 249.437 kb on - strand, within GFF3404at 249.524 kb on + strandat 249.524 kb on + strandat 249.524 kb on + strandat 249.524 kb on + strandat 249.525 kb on - strandat 249.525 kb on - strandat 249.525 kb on - strandat 249.526 kb on + strandat 249.527 kb on - strandat 249.660 kb on + strandat 249.660 kb on + strandat 249.661 kb on - strandat 249.661 kb on - strandat 249.661 kb on - strandat 249.661 kb on - strandat 249.696 kb on + strandat 249.697 kb on - strandat 249.720 kb on + strandat 249.720 kb on + strandat 249.720 kb on + strandat 249.720 kb on + strandat 249.721 kb on - strandat 249.774 kb on + strandat 249.781 kb on - strand, within GFF3405at 249.870 kb on + strand, within GFF3405at 249.870 kb on + strand, within GFF3405at 249.870 kb on + strand, within GFF3405at 249.870 kb on + strand, within GFF3405at 249.871 kb on - strand, within GFF3405at 249.871 kb on - strand, within GFF3405at 249.871 kb on - strand, within GFF3405at 249.871 kb on - strand, within GFF3405at 250.002 kb on + strand, within GFF3405at 250.003 kb on - strand, within GFF3405at 250.017 kb on + strand, within GFF3405at 250.017 kb on + strand, within GFF3405at 250.017 kb on + strand, within GFF3405at 250.018 kb on - strand, within GFF3405at 250.018 kb on - strand, within GFF3405at 250.081 kb on - strand, within GFF3405at 250.081 kb on - strand, within GFF3405at 250.123 kb on - strand, within GFF3405at 250.223 kb on - strand, within GFF3405at 250.416 kb on + strand, within GFF3405at 250.417 kb on - strand, within GFF3405at 250.564 kb on - strand, within GFF3405at 250.564 kb on - strand, within GFF3405at 250.569 kb on + strand, within GFF3405at 250.569 kb on + strand, within GFF3405at 251.039 kb on + strand, within GFF3406at 251.039 kb on + strand, within GFF3406at 251.039 kb on + strand, within GFF3406at 251.105 kb on + strand, within GFF3406at 251.106 kb on - strand, within GFF3406at 251.106 kb on - strand, within GFF3406at 251.111 kb on + strand, within GFF3406at 251.111 kb on + strand, within GFF3406at 251.111 kb on + strand, within GFF3406at 251.111 kb on + strand, within GFF3406at 251.111 kb on + strand, within GFF3406at 251.111 kb on + strand, within GFF3406at 251.111 kb on + strand, within GFF3406at 251.112 kb on - strand, within GFF3406at 251.112 kb on - strand, within GFF3406at 251.112 kb on - strand, within GFF3406at 251.112 kb on - strand, within GFF3406at 251.229 kb on - strand, within GFF3406at 251.358 kb on - strand, within GFF3406at 251.358 kb on - strand, within GFF3406at 251.369 kb on + strand, within GFF3406at 251.370 kb on - strand, within GFF3406

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
248,719 + GFF3404 0.35 -0.7
248,719 + GFF3404 0.35 -0.1
248,719 + GFF3404 0.35 -0.3
248,719 + GFF3404 0.35 +0.4
248,719 + GFF3404 0.35 -0.3
248,720 - GFF3404 0.35 +0.7
248,720 - GFF3404 0.35 +0.1
248,720 - GFF3404 0.35 -0.2
248,720 - GFF3404 0.35 -1.6
248,728 + GFF3404 0.36 +1.0
248,728 + GFF3404 0.36 +0.9
248,951 - GFF3404 0.51 -1.0
248,951 - GFF3404 0.51 +1.1
249,007 + GFF3404 0.55 -0.8
249,008 - GFF3404 0.55 +0.6
249,010 + GFF3404 0.56 -0.8
249,011 - GFF3404 0.56 -2.9
249,011 - GFF3404 0.56 +0.4
249,118 + GFF3404 0.63 +1.0
249,287 - GFF3404 0.75 -0.2
249,287 - GFF3404 0.75 -0.2
249,299 - GFF3404 0.76 +0.5
249,299 - GFF3404 0.76 +0.2
249,428 - GFF3404 0.85 -0.7
249,428 - GFF3404 0.85 -0.5
249,436 + GFF3404 0.86 +0.9
249,437 - GFF3404 0.86 +0.3
249,437 - GFF3404 0.86 -0.4
249,437 - GFF3404 0.86 +0.1
249,524 + +0.2
249,524 + +0.3
249,524 + +0.2
249,524 + +1.0
249,525 - +0.0
249,525 - +0.5
249,525 - +0.6
249,526 + -0.1
249,527 - +0.4
249,660 + +1.3
249,660 + -1.2
249,661 - +0.8
249,661 - +0.2
249,661 - +0.3
249,661 - -0.7
249,696 + -0.4
249,697 - +0.5
249,720 + +0.3
249,720 + +0.2
249,720 + +1.2
249,720 + +1.0
249,721 - -1.0
249,774 + +1.0
249,781 - GFF3405 0.11 -0.2
249,870 + GFF3405 0.18 -0.9
249,870 + GFF3405 0.18 -0.2
249,870 + GFF3405 0.18 +0.4
249,870 + GFF3405 0.18 -0.6
249,871 - GFF3405 0.18 +0.3
249,871 - GFF3405 0.18 +0.3
249,871 - GFF3405 0.18 +0.2
249,871 - GFF3405 0.18 +0.3
250,002 + GFF3405 0.29 -0.6
250,003 - GFF3405 0.29 -0.1
250,017 + GFF3405 0.30 +0.8
250,017 + GFF3405 0.30 -1.3
250,017 + GFF3405 0.30 -0.5
250,018 - GFF3405 0.30 -1.0
250,018 - GFF3405 0.30 -0.1
250,081 - GFF3405 0.35 -0.6
250,081 - GFF3405 0.35 -0.1
250,123 - GFF3405 0.39 +0.6
250,223 - GFF3405 0.47 +0.5
250,416 + GFF3405 0.63 -0.8
250,417 - GFF3405 0.63 -0.2
250,564 - GFF3405 0.75 +1.1
250,564 - GFF3405 0.75 +0.0
250,569 + GFF3405 0.76 +0.1
250,569 + GFF3405 0.76 +0.1
251,039 + GFF3406 0.17 -2.3
251,039 + GFF3406 0.17 +0.6
251,039 + GFF3406 0.17 -0.6
251,105 + GFF3406 0.25 -1.3
251,106 - GFF3406 0.25 -0.9
251,106 - GFF3406 0.25 -0.7
251,111 + GFF3406 0.25 -0.1
251,111 + GFF3406 0.25 +0.2
251,111 + GFF3406 0.25 +0.2
251,111 + GFF3406 0.25 +0.3
251,111 + GFF3406 0.25 -0.2
251,111 + GFF3406 0.25 -0.3
251,111 + GFF3406 0.25 -0.2
251,112 - GFF3406 0.26 -1.2
251,112 - GFF3406 0.26 -0.1
251,112 - GFF3406 0.26 +0.4
251,112 - GFF3406 0.26 -0.3
251,229 - GFF3406 0.40 +0.2
251,358 - GFF3406 0.55 -0.2
251,358 - GFF3406 0.55 +0.1
251,369 + GFF3406 0.57 +0.0
251,370 - GFF3406 0.57 +1.0

Or see this region's nucleotide sequence