Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3372 and GFF3373 overlap by 4 nucleotides GFF3373 and GFF3374 overlap by 4 nucleotides GFF3374 and GFF3375 are separated by 52 nucleotides
GFF3372 - hypothetical protein, at 216,534 to 216,950
GFF3372
GFF3373 - Taurine import ATP-binding protein TauB, at 216,947 to 217,798
GFF3373
GFF3374 - hypothetical protein, at 217,795 to 218,793
GFF3374
GFF3375 - hypothetical protein, at 218,846 to 219,613
GFF3375
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 216.853 kb on + strand, within GFF3372 at 216.853 kb on + strand, within GFF3372 at 216.901 kb on + strand, within GFF3372 at 217.068 kb on + strand, within GFF3373 at 217.069 kb on - strand, within GFF3373 at 217.221 kb on + strand, within GFF3373 at 217.320 kb on + strand, within GFF3373 at 217.323 kb on + strand, within GFF3373 at 217.324 kb on - strand, within GFF3373 at 217.329 kb on + strand, within GFF3373 at 217.329 kb on + strand, within GFF3373 at 217.473 kb on + strand, within GFF3373 at 217.488 kb on + strand, within GFF3373 at 217.488 kb on + strand, within GFF3373 at 217.488 kb on + strand, within GFF3373 at 217.546 kb on - strand, within GFF3373 at 217.570 kb on - strand, within GFF3373 at 217.651 kb on + strand, within GFF3373 at 217.652 kb on - strand, within GFF3373 at 217.653 kb on + strand, within GFF3373 at 217.654 kb on - strand, within GFF3373 at 217.836 kb on - strand at 217.935 kb on - strand, within GFF3374 at 217.935 kb on - strand, within GFF3374 at 217.935 kb on - strand, within GFF3374 at 217.979 kb on + strand, within GFF3374 at 217.980 kb on - strand, within GFF3374 at 218.009 kb on + strand, within GFF3374 at 218.009 kb on + strand, within GFF3374 at 218.010 kb on - strand, within GFF3374 at 218.010 kb on - strand, within GFF3374 at 218.117 kb on + strand, within GFF3374 at 218.118 kb on - strand, within GFF3374 at 218.118 kb on - strand, within GFF3374 at 218.118 kb on - strand, within GFF3374 at 218.129 kb on + strand, within GFF3374 at 218.129 kb on + strand, within GFF3374 at 218.130 kb on - strand, within GFF3374 at 218.281 kb on + strand, within GFF3374 at 218.282 kb on - strand, within GFF3374 at 218.321 kb on + strand, within GFF3374 at 218.652 kb on - strand, within GFF3374 at 218.652 kb on - strand, within GFF3374 at 218.654 kb on + strand, within GFF3374 at 218.655 kb on - strand, within GFF3374 at 218.941 kb on - strand, within GFF3375 at 218.941 kb on - strand, within GFF3375 at 219.093 kb on + strand, within GFF3375 at 219.093 kb on + strand, within GFF3375 at 219.094 kb on - strand, within GFF3375 at 219.094 kb on - strand, within GFF3375 at 219.094 kb on - strand, within GFF3375 at 219.337 kb on - strand, within GFF3375 at 219.339 kb on - strand, within GFF3375 at 219.339 kb on - strand, within GFF3375 at 219.426 kb on + strand, within GFF3375 at 219.468 kb on - strand, within GFF3375 at 219.538 kb on - strand at 219.538 kb on - strand at 219.542 kb on + strand at 219.542 kb on + strand at 219.542 kb on + strand at 219.543 kb on - strand at 219.543 kb on - strand at 219.543 kb on - strand at 219.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 216,853 + GFF3372 0.76 +0.2 216,853 + GFF3372 0.76 +0.3 216,901 + GFF3372 0.88 -0.6 217,068 + GFF3373 0.14 +0.1 217,069 - GFF3373 0.14 -1.2 217,221 + GFF3373 0.32 -0.3 217,320 + GFF3373 0.44 -2.1 217,323 + GFF3373 0.44 -0.5 217,324 - GFF3373 0.44 +0.9 217,329 + GFF3373 0.45 -0.8 217,329 + GFF3373 0.45 -0.1 217,473 + GFF3373 0.62 -0.1 217,488 + GFF3373 0.63 +0.6 217,488 + GFF3373 0.63 -0.9 217,488 + GFF3373 0.63 -0.5 217,546 - GFF3373 0.70 +0.9 217,570 - GFF3373 0.73 +0.4 217,651 + GFF3373 0.83 -1.5 217,652 - GFF3373 0.83 -0.8 217,653 + GFF3373 0.83 -0.6 217,654 - GFF3373 0.83 -0.2 217,836 - -0.7 217,935 - GFF3374 0.14 +0.1 217,935 - GFF3374 0.14 +0.2 217,935 - GFF3374 0.14 +0.3 217,979 + GFF3374 0.18 -0.0 217,980 - GFF3374 0.19 +0.1 218,009 + GFF3374 0.21 -0.5 218,009 + GFF3374 0.21 +0.1 218,010 - GFF3374 0.22 -0.7 218,010 - GFF3374 0.22 +0.6 218,117 + GFF3374 0.32 +0.1 218,118 - GFF3374 0.32 -0.4 218,118 - GFF3374 0.32 +0.2 218,118 - GFF3374 0.32 -0.5 218,129 + GFF3374 0.33 +0.1 218,129 + GFF3374 0.33 -0.9 218,130 - GFF3374 0.34 -2.8 218,281 + GFF3374 0.49 -0.2 218,282 - GFF3374 0.49 +0.2 218,321 + GFF3374 0.53 +0.2 218,652 - GFF3374 0.86 +0.7 218,652 - GFF3374 0.86 +1.1 218,654 + GFF3374 0.86 +0.1 218,655 - GFF3374 0.86 +1.9 218,941 - GFF3375 0.12 -0.6 218,941 - GFF3375 0.12 +1.1 219,093 + GFF3375 0.32 -0.1 219,093 + GFF3375 0.32 -1.1 219,094 - GFF3375 0.32 -0.0 219,094 - GFF3375 0.32 +0.0 219,094 - GFF3375 0.32 +0.4 219,337 - GFF3375 0.64 -0.2 219,339 - GFF3375 0.64 -0.1 219,339 - GFF3375 0.64 -0.2 219,426 + GFF3375 0.76 -1.0 219,468 - GFF3375 0.81 +0.1 219,538 - +0.8 219,538 - +0.1 219,542 + +0.5 219,542 + +0.2 219,542 + -0.0 219,543 - +0.4 219,543 - -0.0 219,543 - +0.9 219,543 - -0.0
Or see this region's nucleotide sequence