Strain Fitness in Xanthobacter sp. DMC5 around GFF3360

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3359 and GFF3360 are separated by 30 nucleotidesGFF3360 and GFF3361 are separated by 2 nucleotides GFF3359 - hypothetical protein, at 202,972 to 204,159 GFF3359 GFF3360 - Acetophenone carboxylase delta subunit, at 204,190 to 205,971 GFF3360 GFF3361 - Acetophenone carboxylase gamma subunit, at 205,974 to 207,191 GFF3361 Position (kb) 204 205 206Strain fitness (log2 ratio) -1 0 1at 203.250 kb on + strand, within GFF3359at 203.250 kb on + strand, within GFF3359at 203.251 kb on - strand, within GFF3359at 203.251 kb on - strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.283 kb on - strand, within GFF3359at 203.342 kb on + strand, within GFF3359at 203.342 kb on + strand, within GFF3359at 203.342 kb on + strand, within GFF3359at 203.343 kb on - strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.361 kb on - strand, within GFF3359at 203.361 kb on - strand, within GFF3359at 203.663 kb on - strand, within GFF3359at 203.669 kb on + strand, within GFF3359at 203.726 kb on + strand, within GFF3359at 204.267 kb on - strandat 204.267 kb on - strandat 204.296 kb on + strandat 204.297 kb on - strandat 204.297 kb on - strandat 204.380 kb on + strand, within GFF3360at 204.381 kb on - strand, within GFF3360at 204.558 kb on - strand, within GFF3360at 204.558 kb on - strand, within GFF3360at 204.565 kb on - strand, within GFF3360at 204.773 kb on - strand, within GFF3360at 204.818 kb on + strand, within GFF3360at 204.818 kb on + strand, within GFF3360at 204.818 kb on + strand, within GFF3360at 204.819 kb on - strand, within GFF3360at 204.920 kb on - strand, within GFF3360at 204.920 kb on - strand, within GFF3360at 205.022 kb on + strand, within GFF3360at 205.022 kb on + strand, within GFF3360at 205.023 kb on - strand, within GFF3360at 205.023 kb on - strand, within GFF3360at 205.023 kb on - strand, within GFF3360at 205.211 kb on + strand, within GFF3360at 205.211 kb on + strand, within GFF3360at 205.211 kb on + strand, within GFF3360at 205.211 kb on + strand, within GFF3360at 205.211 kb on + strand, within GFF3360at 205.212 kb on - strand, within GFF3360at 205.212 kb on - strand, within GFF3360at 205.212 kb on - strand, within GFF3360at 205.369 kb on + strand, within GFF3360at 205.370 kb on - strand, within GFF3360at 205.370 kb on - strand, within GFF3360at 205.370 kb on - strand, within GFF3360at 205.401 kb on + strand, within GFF3360at 205.402 kb on - strand, within GFF3360at 205.677 kb on + strand, within GFF3360at 205.678 kb on - strand, within GFF3360at 205.678 kb on - strand, within GFF3360at 205.805 kb on + strandat 205.805 kb on + strandat 205.805 kb on + strandat 205.814 kb on + strandat 205.814 kb on + strandat 205.815 kb on - strandat 205.815 kb on - strandat 205.820 kb on + strandat 205.976 kb on - strandat 206.069 kb on - strandat 206.069 kb on - strandat 206.069 kb on - strandat 206.128 kb on + strand, within GFF3361at 206.128 kb on + strand, within GFF3361at 206.129 kb on - strand, within GFF3361at 206.323 kb on + strand, within GFF3361at 206.544 kb on + strand, within GFF3361at 206.545 kb on - strand, within GFF3361at 206.545 kb on - strand, within GFF3361at 206.701 kb on + strand, within GFF3361at 206.702 kb on - strand, within GFF3361

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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203,250 + GFF3359 0.23 +0.3
203,250 + GFF3359 0.23 -0.2
203,251 - GFF3359 0.23 +0.5
203,251 - GFF3359 0.23 +0.5
203,252 + GFF3359 0.24 +0.0
203,252 + GFF3359 0.24 +0.3
203,252 + GFF3359 0.24 -0.9
203,252 + GFF3359 0.24 -0.1
203,252 + GFF3359 0.24 +0.4
203,253 - GFF3359 0.24 +0.7
203,253 - GFF3359 0.24 -0.2
203,253 - GFF3359 0.24 -0.1
203,253 - GFF3359 0.24 +0.9
203,283 - GFF3359 0.26 +0.2
203,342 + GFF3359 0.31 -0.2
203,342 + GFF3359 0.31 +0.5
203,342 + GFF3359 0.31 -0.5
203,343 - GFF3359 0.31 -0.5
203,360 + GFF3359 0.33 -0.1
203,360 + GFF3359 0.33 -0.1
203,360 + GFF3359 0.33 -0.4
203,360 + GFF3359 0.33 +0.3
203,360 + GFF3359 0.33 +0.9
203,361 - GFF3359 0.33 +0.7
203,361 - GFF3359 0.33 +0.2
203,663 - GFF3359 0.58 -0.3
203,669 + GFF3359 0.59 -0.1
203,726 + GFF3359 0.63 +0.3
204,267 - +0.1
204,267 - -1.7
204,296 + +0.0
204,297 - -0.1
204,297 - -0.1
204,380 + GFF3360 0.11 +0.5
204,381 - GFF3360 0.11 +0.0
204,558 - GFF3360 0.21 -0.5
204,558 - GFF3360 0.21 +0.4
204,565 - GFF3360 0.21 +0.7
204,773 - GFF3360 0.33 -0.7
204,818 + GFF3360 0.35 +0.4
204,818 + GFF3360 0.35 -0.3
204,818 + GFF3360 0.35 +1.6
204,819 - GFF3360 0.35 +0.8
204,920 - GFF3360 0.41 +0.4
204,920 - GFF3360 0.41 -0.9
205,022 + GFF3360 0.47 -0.2
205,022 + GFF3360 0.47 +0.3
205,023 - GFF3360 0.47 -0.2
205,023 - GFF3360 0.47 -0.2
205,023 - GFF3360 0.47 -0.4
205,211 + GFF3360 0.57 +0.2
205,211 + GFF3360 0.57 +1.1
205,211 + GFF3360 0.57 -0.7
205,211 + GFF3360 0.57 -0.5
205,211 + GFF3360 0.57 -0.1
205,212 - GFF3360 0.57 +0.2
205,212 - GFF3360 0.57 +0.0
205,212 - GFF3360 0.57 +0.7
205,369 + GFF3360 0.66 -1.3
205,370 - GFF3360 0.66 -0.2
205,370 - GFF3360 0.66 -0.1
205,370 - GFF3360 0.66 -0.9
205,401 + GFF3360 0.68 +0.2
205,402 - GFF3360 0.68 +0.1
205,677 + GFF3360 0.83 -0.7
205,678 - GFF3360 0.84 -0.6
205,678 - GFF3360 0.84 +1.0
205,805 + -0.1
205,805 + +0.4
205,805 + -0.1
205,814 + +0.6
205,814 + +0.1
205,815 - -0.5
205,815 - -0.3
205,820 + +0.3
205,976 - +0.5
206,069 - -0.2
206,069 - -0.4
206,069 - -0.1
206,128 + GFF3361 0.13 -0.4
206,128 + GFF3361 0.13 +0.3
206,129 - GFF3361 0.13 -1.5
206,323 + GFF3361 0.29 -0.6
206,544 + GFF3361 0.47 +0.7
206,545 - GFF3361 0.47 +0.4
206,545 - GFF3361 0.47 +0.5
206,701 + GFF3361 0.60 -0.0
206,702 - GFF3361 0.60 +0.1

Or see this region's nucleotide sequence