Strain Fitness in Xanthobacter sp. DMC5 around GFF3337

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3336 and GFF3337 overlap by 4 nucleotidesGFF3337 and GFF3338 are separated by 45 nucleotides GFF3336 - Homoserine kinase, at 177,525 to 178,592 GFF3336 GFF3337 - Isoleucine 2-epimerase, at 178,589 to 179,935 GFF3337 GFF3338 - Beta-alanine--pyruvate aminotransferase, at 179,981 to 181,315 GFF3338 Position (kb) 178 179 180Strain fitness (log2 ratio) -1 0 1 2at 177.718 kb on + strand, within GFF3336at 177.718 kb on + strand, within GFF3336at 177.719 kb on - strand, within GFF3336at 177.719 kb on - strand, within GFF3336at 177.719 kb on - strand, within GFF3336at 177.719 kb on - strand, within GFF3336at 177.864 kb on + strand, within GFF3336at 177.864 kb on + strand, within GFF3336at 178.207 kb on - strand, within GFF3336at 178.452 kb on + strand, within GFF3336at 178.452 kb on + strand, within GFF3336at 178.452 kb on + strand, within GFF3336at 178.452 kb on + strand, within GFF3336at 178.452 kb on + strand, within GFF3336at 178.452 kb on + strand, within GFF3336at 178.452 kb on + strand, within GFF3336at 178.453 kb on - strand, within GFF3336at 178.453 kb on - strand, within GFF3336at 178.453 kb on - strand, within GFF3336at 178.453 kb on - strand, within GFF3336at 178.453 kb on - strand, within GFF3336at 178.453 kb on - strand, within GFF3336at 178.453 kb on - strand, within GFF3336at 178.453 kb on - strand, within GFF3336at 178.718 kb on + strandat 178.730 kb on + strand, within GFF3337at 178.730 kb on + strand, within GFF3337at 178.730 kb on + strand, within GFF3337at 178.730 kb on + strand, within GFF3337at 178.730 kb on + strand, within GFF3337at 178.731 kb on - strand, within GFF3337at 178.797 kb on - strand, within GFF3337at 178.797 kb on - strand, within GFF3337at 178.808 kb on + strand, within GFF3337at 178.863 kb on - strand, within GFF3337at 178.863 kb on - strand, within GFF3337at 178.899 kb on - strand, within GFF3337at 178.899 kb on - strand, within GFF3337at 178.899 kb on - strand, within GFF3337at 179.030 kb on - strand, within GFF3337at 179.030 kb on - strand, within GFF3337at 179.067 kb on - strand, within GFF3337at 179.067 kb on - strand, within GFF3337at 179.067 kb on - strand, within GFF3337at 179.067 kb on - strand, within GFF3337at 179.216 kb on + strand, within GFF3337at 179.216 kb on + strand, within GFF3337at 179.216 kb on + strand, within GFF3337at 179.217 kb on - strand, within GFF3337at 179.217 kb on - strand, within GFF3337at 179.297 kb on + strand, within GFF3337at 179.297 kb on + strand, within GFF3337at 179.297 kb on + strand, within GFF3337at 179.297 kb on + strand, within GFF3337at 179.298 kb on - strand, within GFF3337at 179.540 kb on + strand, within GFF3337at 179.541 kb on - strand, within GFF3337at 179.720 kb on + strand, within GFF3337at 179.721 kb on - strand, within GFF3337at 179.721 kb on - strand, within GFF3337at 179.721 kb on - strand, within GFF3337at 179.721 kb on - strand, within GFF3337at 179.722 kb on + strand, within GFF3337at 179.722 kb on + strand, within GFF3337at 179.722 kb on + strand, within GFF3337at 179.835 kb on - strandat 179.932 kb on - strandat 180.129 kb on + strand, within GFF3338at 180.129 kb on + strand, within GFF3338at 180.130 kb on - strand, within GFF3338at 180.130 kb on - strand, within GFF3338at 180.200 kb on - strand, within GFF3338at 180.200 kb on - strand, within GFF3338at 180.294 kb on + strand, within GFF3338at 180.294 kb on + strand, within GFF3338at 180.294 kb on + strand, within GFF3338at 180.295 kb on - strand, within GFF3338at 180.295 kb on - strand, within GFF3338at 180.295 kb on - strand, within GFF3338at 180.295 kb on - strand, within GFF3338at 180.295 kb on - strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.345 kb on + strand, within GFF3338at 180.346 kb on - strand, within GFF3338at 180.346 kb on - strand, within GFF3338at 180.346 kb on - strand, within GFF3338at 180.346 kb on - strand, within GFF3338at 180.346 kb on - strand, within GFF3338at 180.349 kb on + strand, within GFF3338at 180.349 kb on + strand, within GFF3338at 180.349 kb on + strand, within GFF3338at 180.349 kb on + strand, within GFF3338at 180.350 kb on - strand, within GFF3338at 180.350 kb on - strand, within GFF3338at 180.350 kb on - strand, within GFF3338at 180.351 kb on + strand, within GFF3338at 180.352 kb on - strand, within GFF3338at 180.473 kb on + strand, within GFF3338at 180.474 kb on - strand, within GFF3338at 180.474 kb on - strand, within GFF3338at 180.474 kb on - strand, within GFF3338at 180.474 kb on - strand, within GFF3338at 180.474 kb on - strand, within GFF3338at 180.495 kb on + strand, within GFF3338at 180.496 kb on - strand, within GFF3338at 180.496 kb on - strand, within GFF3338at 180.496 kb on - strand, within GFF3338at 180.600 kb on + strand, within GFF3338at 180.600 kb on + strand, within GFF3338at 180.601 kb on - strand, within GFF3338at 180.834 kb on + strand, within GFF3338at 180.861 kb on + strand, within GFF3338

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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177,718 + GFF3336 0.18 +0.6
177,718 + GFF3336 0.18 +1.3
177,719 - GFF3336 0.18 +0.2
177,719 - GFF3336 0.18 +1.0
177,719 - GFF3336 0.18 +0.4
177,719 - GFF3336 0.18 -0.6
177,864 + GFF3336 0.32 -0.4
177,864 + GFF3336 0.32 -0.9
178,207 - GFF3336 0.64 +0.3
178,452 + GFF3336 0.87 -0.4
178,452 + GFF3336 0.87 +0.1
178,452 + GFF3336 0.87 +0.0
178,452 + GFF3336 0.87 -0.4
178,452 + GFF3336 0.87 +0.5
178,452 + GFF3336 0.87 -0.3
178,452 + GFF3336 0.87 +0.4
178,453 - GFF3336 0.87 -0.2
178,453 - GFF3336 0.87 -1.2
178,453 - GFF3336 0.87 +0.6
178,453 - GFF3336 0.87 -0.2
178,453 - GFF3336 0.87 +0.7
178,453 - GFF3336 0.87 -0.4
178,453 - GFF3336 0.87 -0.2
178,453 - GFF3336 0.87 -0.3
178,718 + +0.4
178,730 + GFF3337 0.10 +0.2
178,730 + GFF3337 0.10 -0.1
178,730 + GFF3337 0.10 +0.6
178,730 + GFF3337 0.10 -0.1
178,730 + GFF3337 0.10 -1.1
178,731 - GFF3337 0.11 -0.1
178,797 - GFF3337 0.15 +0.1
178,797 - GFF3337 0.15 +0.5
178,808 + GFF3337 0.16 +1.0
178,863 - GFF3337 0.20 +1.9
178,863 - GFF3337 0.20 +0.3
178,899 - GFF3337 0.23 -0.2
178,899 - GFF3337 0.23 +0.0
178,899 - GFF3337 0.23 +0.6
179,030 - GFF3337 0.33 -0.2
179,030 - GFF3337 0.33 +0.1
179,067 - GFF3337 0.35 +0.1
179,067 - GFF3337 0.35 +0.5
179,067 - GFF3337 0.35 +0.1
179,067 - GFF3337 0.35 -0.7
179,216 + GFF3337 0.47 +0.5
179,216 + GFF3337 0.47 +0.4
179,216 + GFF3337 0.47 +0.7
179,217 - GFF3337 0.47 -0.1
179,217 - GFF3337 0.47 +0.1
179,297 + GFF3337 0.53 -0.3
179,297 + GFF3337 0.53 +0.5
179,297 + GFF3337 0.53 -0.3
179,297 + GFF3337 0.53 +0.5
179,298 - GFF3337 0.53 -0.1
179,540 + GFF3337 0.71 -0.7
179,541 - GFF3337 0.71 +1.1
179,720 + GFF3337 0.84 -0.4
179,721 - GFF3337 0.84 -0.2
179,721 - GFF3337 0.84 -1.4
179,721 - GFF3337 0.84 -0.5
179,721 - GFF3337 0.84 -1.5
179,722 + GFF3337 0.84 +0.2
179,722 + GFF3337 0.84 -0.9
179,722 + GFF3337 0.84 -0.8
179,835 - +0.3
179,932 - +0.7
180,129 + GFF3338 0.11 -0.3
180,129 + GFF3338 0.11 +0.2
180,130 - GFF3338 0.11 +0.5
180,130 - GFF3338 0.11 -0.0
180,200 - GFF3338 0.16 +0.0
180,200 - GFF3338 0.16 -0.1
180,294 + GFF3338 0.23 +0.8
180,294 + GFF3338 0.23 -1.1
180,294 + GFF3338 0.23 -0.4
180,295 - GFF3338 0.24 +0.2
180,295 - GFF3338 0.24 -0.2
180,295 - GFF3338 0.24 +0.2
180,295 - GFF3338 0.24 +0.2
180,295 - GFF3338 0.24 -0.1
180,345 + GFF3338 0.27 -1.0
180,345 + GFF3338 0.27 -0.3
180,345 + GFF3338 0.27 -0.2
180,345 + GFF3338 0.27 -1.0
180,345 + GFF3338 0.27 -0.4
180,345 + GFF3338 0.27 +1.0
180,346 - GFF3338 0.27 -0.8
180,346 - GFF3338 0.27 -0.1
180,346 - GFF3338 0.27 +0.8
180,346 - GFF3338 0.27 +0.5
180,346 - GFF3338 0.27 -0.0
180,349 + GFF3338 0.28 +0.2
180,349 + GFF3338 0.28 +0.3
180,349 + GFF3338 0.28 +0.2
180,349 + GFF3338 0.28 -0.2
180,350 - GFF3338 0.28 +0.2
180,350 - GFF3338 0.28 -0.0
180,350 - GFF3338 0.28 +0.4
180,351 + GFF3338 0.28 -0.8
180,352 - GFF3338 0.28 -0.7
180,473 + GFF3338 0.37 -1.1
180,474 - GFF3338 0.37 +0.8
180,474 - GFF3338 0.37 -0.6
180,474 - GFF3338 0.37 -0.9
180,474 - GFF3338 0.37 +0.2
180,474 - GFF3338 0.37 +1.3
180,495 + GFF3338 0.39 +0.2
180,496 - GFF3338 0.39 +1.3
180,496 - GFF3338 0.39 -0.3
180,496 - GFF3338 0.39 +0.8
180,600 + GFF3338 0.46 -0.3
180,600 + GFF3338 0.46 +0.1
180,601 - GFF3338 0.46 -0.3
180,834 + GFF3338 0.64 -0.4
180,861 + GFF3338 0.66 +0.5

Or see this region's nucleotide sequence