Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3328 and GFF3329 are separated by 1 nucleotides GFF3329 and GFF3330 overlap by 4 nucleotides GFF3330 and GFF3331 are separated by 35 nucleotides
GFF3328 - hypothetical protein, at 168,158 to 169,123
GFF3328
GFF3329 - Riboflavin transport system permease protein RibX, at 169,125 to 169,946
GFF3329
GFF3330 - Bicarbonate transport ATP-binding protein CmpD, at 169,943 to 170,722
GFF3330
GFF3331 - hypothetical protein, at 170,758 to 171,759
GFF3331
Position (kb) 169
170 Strain fitness (log2 ratio) -1
0
1
2 at 168.333 kb on + strand, within GFF3328 at 168.334 kb on - strand, within GFF3328 at 168.378 kb on + strand, within GFF3328 at 168.378 kb on + strand, within GFF3328 at 168.379 kb on - strand, within GFF3328 at 168.379 kb on - strand, within GFF3328 at 168.423 kb on + strand, within GFF3328 at 168.423 kb on + strand, within GFF3328 at 168.423 kb on + strand, within GFF3328 at 168.423 kb on + strand, within GFF3328 at 168.423 kb on + strand, within GFF3328 at 168.505 kb on - strand, within GFF3328 at 168.597 kb on + strand, within GFF3328 at 168.598 kb on - strand, within GFF3328 at 168.598 kb on - strand, within GFF3328 at 168.598 kb on - strand, within GFF3328 at 168.598 kb on - strand, within GFF3328 at 168.598 kb on - strand, within GFF3328 at 168.603 kb on + strand, within GFF3328 at 168.603 kb on + strand, within GFF3328 at 168.604 kb on - strand, within GFF3328 at 168.604 kb on - strand, within GFF3328 at 168.841 kb on - strand, within GFF3328 at 169.599 kb on + strand, within GFF3329 at 169.625 kb on + strand, within GFF3329 at 169.626 kb on - strand, within GFF3329 at 169.626 kb on - strand, within GFF3329 at 169.626 kb on - strand, within GFF3329 at 169.627 kb on + strand, within GFF3329 at 169.627 kb on + strand, within GFF3329 at 169.628 kb on - strand, within GFF3329 at 169.628 kb on - strand, within GFF3329 at 169.644 kb on - strand, within GFF3329 at 169.720 kb on + strand, within GFF3329 at 169.720 kb on + strand, within GFF3329 at 169.720 kb on + strand, within GFF3329 at 169.750 kb on + strand, within GFF3329 at 169.751 kb on - strand, within GFF3329 at 169.751 kb on - strand, within GFF3329 at 169.825 kb on + strand, within GFF3329 at 169.825 kb on + strand, within GFF3329 at 169.825 kb on + strand, within GFF3329 at 169.826 kb on - strand, within GFF3329 at 169.826 kb on - strand, within GFF3329 at 169.826 kb on - strand, within GFF3329 at 169.826 kb on - strand, within GFF3329 at 170.004 kb on + strand at 170.004 kb on + strand at 170.646 kb on - strand at 170.685 kb on + strand at 170.686 kb on - strand at 170.686 kb on - strand at 170.715 kb on + strand at 170.715 kb on + strand at 170.716 kb on - strand at 170.716 kb on - strand at 170.716 kb on - strand at 170.784 kb on - strand at 170.868 kb on - strand, within GFF3331 at 170.889 kb on + strand, within GFF3331 at 170.889 kb on + strand, within GFF3331 at 170.899 kb on - strand, within GFF3331
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 168,333 + GFF3328 0.18 +0.8 168,334 - GFF3328 0.18 -0.4 168,378 + GFF3328 0.23 -0.5 168,378 + GFF3328 0.23 +0.5 168,379 - GFF3328 0.23 +0.6 168,379 - GFF3328 0.23 -0.5 168,423 + GFF3328 0.27 -0.6 168,423 + GFF3328 0.27 -1.2 168,423 + GFF3328 0.27 -0.4 168,423 + GFF3328 0.27 -0.2 168,423 + GFF3328 0.27 +0.3 168,505 - GFF3328 0.36 -0.2 168,597 + GFF3328 0.45 -0.2 168,598 - GFF3328 0.46 +0.6 168,598 - GFF3328 0.46 +0.3 168,598 - GFF3328 0.46 +2.2 168,598 - GFF3328 0.46 +0.9 168,598 - GFF3328 0.46 +0.4 168,603 + GFF3328 0.46 -1.0 168,603 + GFF3328 0.46 -0.9 168,604 - GFF3328 0.46 +1.7 168,604 - GFF3328 0.46 -1.3 168,841 - GFF3328 0.71 -0.4 169,599 + GFF3329 0.58 +0.3 169,625 + GFF3329 0.61 -0.1 169,626 - GFF3329 0.61 -1.4 169,626 - GFF3329 0.61 +0.3 169,626 - GFF3329 0.61 -0.3 169,627 + GFF3329 0.61 -0.1 169,627 + GFF3329 0.61 +0.0 169,628 - GFF3329 0.61 -0.7 169,628 - GFF3329 0.61 -0.3 169,644 - GFF3329 0.63 -0.2 169,720 + GFF3329 0.72 +0.0 169,720 + GFF3329 0.72 +0.3 169,720 + GFF3329 0.72 +1.1 169,750 + GFF3329 0.76 -0.0 169,751 - GFF3329 0.76 -0.6 169,751 - GFF3329 0.76 +0.2 169,825 + GFF3329 0.85 +0.2 169,825 + GFF3329 0.85 -1.0 169,825 + GFF3329 0.85 +0.1 169,826 - GFF3329 0.85 +0.8 169,826 - GFF3329 0.85 -0.5 169,826 - GFF3329 0.85 -0.5 169,826 - GFF3329 0.85 +1.4 170,004 + -1.2 170,004 + +0.4 170,646 - -0.1 170,685 + +1.2 170,686 - -0.0 170,686 - +0.6 170,715 + +0.7 170,715 + -0.3 170,716 - -0.7 170,716 - +0.8 170,716 - -0.4 170,784 - -0.4 170,868 - GFF3331 0.11 -0.2 170,889 + GFF3331 0.13 -0.2 170,889 + GFF3331 0.13 -0.7 170,899 - GFF3331 0.14 +1.2
Or see this region's nucleotide sequence