Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3313 and GFF3314 are separated by 178 nucleotides GFF3314 and GFF3315 are separated by 3 nucleotides GFF3315 and GFF3316 are separated by 1 nucleotides
GFF3313 - L-arabonate dehydratase, at 152,284 to 154,005
GFF3313
GFF3314 - hypothetical protein, at 154,184 to 155,506
GFF3314
GFF3315 - Lactose transport system permease protein LacF, at 155,510 to 156,469
GFF3315
GFF3316 - Diacetylchitobiose uptake system permease protein NgcG, at 156,471 to 157,331
GFF3316
Position (kb) 154
155
156 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 153.612 kb on - strand, within GFF3313 at 153.833 kb on + strand at 153.842 kb on + strand at 153.842 kb on + strand at 153.843 kb on - strand at 153.947 kb on + strand at 154.085 kb on + strand at 154.086 kb on - strand at 154.086 kb on - strand at 154.157 kb on + strand at 154.236 kb on + strand at 154.393 kb on + strand, within GFF3314 at 154.439 kb on + strand, within GFF3314 at 154.440 kb on - strand, within GFF3314 at 154.440 kb on - strand, within GFF3314 at 154.440 kb on - strand, within GFF3314 at 154.440 kb on - strand, within GFF3314 at 154.490 kb on + strand, within GFF3314 at 154.490 kb on + strand, within GFF3314 at 154.490 kb on + strand, within GFF3314 at 154.491 kb on - strand, within GFF3314 at 154.491 kb on - strand, within GFF3314 at 154.491 kb on - strand, within GFF3314 at 154.550 kb on + strand, within GFF3314 at 154.551 kb on - strand, within GFF3314 at 154.614 kb on - strand, within GFF3314 at 154.614 kb on - strand, within GFF3314 at 154.634 kb on + strand, within GFF3314 at 154.635 kb on - strand, within GFF3314 at 154.635 kb on - strand, within GFF3314 at 154.636 kb on + strand, within GFF3314 at 154.637 kb on - strand, within GFF3314 at 154.637 kb on - strand, within GFF3314 at 154.650 kb on - strand, within GFF3314 at 154.652 kb on + strand, within GFF3314 at 154.653 kb on - strand, within GFF3314 at 154.850 kb on + strand, within GFF3314 at 154.850 kb on + strand, within GFF3314 at 154.851 kb on - strand, within GFF3314 at 154.944 kb on - strand, within GFF3314 at 154.944 kb on - strand, within GFF3314 at 154.988 kb on + strand, within GFF3314 at 154.988 kb on + strand, within GFF3314 at 154.994 kb on + strand, within GFF3314 at 154.994 kb on + strand, within GFF3314 at 154.994 kb on + strand, within GFF3314 at 154.994 kb on + strand, within GFF3314 at 154.995 kb on - strand, within GFF3314 at 154.995 kb on - strand, within GFF3314 at 154.995 kb on - strand, within GFF3314 at 155.177 kb on + strand, within GFF3314 at 155.178 kb on - strand, within GFF3314 at 155.324 kb on + strand, within GFF3314 at 155.363 kb on + strand, within GFF3314 at 155.364 kb on - strand, within GFF3314 at 155.364 kb on - strand, within GFF3314 at 155.364 kb on - strand, within GFF3314 at 155.387 kb on + strand at 155.388 kb on - strand at 155.414 kb on + strand at 155.414 kb on + strand at 155.415 kb on - strand at 155.415 kb on - strand at 155.415 kb on - strand at 155.645 kb on + strand, within GFF3315 at 155.663 kb on + strand, within GFF3315 at 155.684 kb on + strand, within GFF3315 at 155.685 kb on - strand, within GFF3315 at 155.685 kb on - strand, within GFF3315 at 155.742 kb on - strand, within GFF3315 at 155.858 kb on + strand, within GFF3315 at 155.921 kb on + strand, within GFF3315 at 155.921 kb on + strand, within GFF3315 at 155.921 kb on + strand, within GFF3315 at 155.922 kb on - strand, within GFF3315 at 155.922 kb on - strand, within GFF3315 at 155.954 kb on + strand, within GFF3315 at 155.954 kb on + strand, within GFF3315 at 155.955 kb on - strand, within GFF3315 at 155.955 kb on - strand, within GFF3315 at 155.961 kb on - strand, within GFF3315 at 155.979 kb on - strand, within GFF3315 at 156.188 kb on + strand, within GFF3315 at 156.189 kb on - strand, within GFF3315 at 156.189 kb on - strand, within GFF3315 at 156.189 kb on - strand, within GFF3315 at 156.189 kb on - strand, within GFF3315 at 156.189 kb on - strand, within GFF3315 at 156.189 kb on - strand, within GFF3315 at 156.230 kb on + strand, within GFF3315 at 156.230 kb on + strand, within GFF3315 at 156.231 kb on - strand, within GFF3315 at 156.231 kb on - strand, within GFF3315 at 156.231 kb on - strand, within GFF3315 at 156.326 kb on + strand, within GFF3315 at 156.326 kb on + strand, within GFF3315 at 156.326 kb on + strand, within GFF3315 at 156.326 kb on + strand, within GFF3315 at 156.332 kb on + strand, within GFF3315 at 156.333 kb on - strand, within GFF3315 at 156.333 kb on - strand, within GFF3315 at 156.333 kb on - strand, within GFF3315 at 156.333 kb on - strand, within GFF3315 at 156.333 kb on - strand, within GFF3315
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 153,612 - GFF3313 0.77 +0.2 153,833 + -0.0 153,842 + -0.8 153,842 + +0.7 153,843 - -0.5 153,947 + +1.2 154,085 + -1.5 154,086 - -0.4 154,086 - -0.3 154,157 + +0.4 154,236 + -0.0 154,393 + GFF3314 0.16 +1.0 154,439 + GFF3314 0.19 -0.0 154,440 - GFF3314 0.19 +0.9 154,440 - GFF3314 0.19 -0.0 154,440 - GFF3314 0.19 +0.1 154,440 - GFF3314 0.19 -0.5 154,490 + GFF3314 0.23 -0.6 154,490 + GFF3314 0.23 -0.2 154,490 + GFF3314 0.23 -0.8 154,491 - GFF3314 0.23 +0.3 154,491 - GFF3314 0.23 -0.3 154,491 - GFF3314 0.23 -0.4 154,550 + GFF3314 0.28 +0.1 154,551 - GFF3314 0.28 +0.8 154,614 - GFF3314 0.33 +0.3 154,614 - GFF3314 0.33 +0.9 154,634 + GFF3314 0.34 -0.4 154,635 - GFF3314 0.34 -0.2 154,635 - GFF3314 0.34 +0.1 154,636 + GFF3314 0.34 +1.6 154,637 - GFF3314 0.34 +0.8 154,637 - GFF3314 0.34 -0.3 154,650 - GFF3314 0.35 -0.4 154,652 + GFF3314 0.35 -1.3 154,653 - GFF3314 0.35 +0.6 154,850 + GFF3314 0.50 -1.0 154,850 + GFF3314 0.50 -0.1 154,851 - GFF3314 0.50 -0.0 154,944 - GFF3314 0.57 +1.1 154,944 - GFF3314 0.57 +0.6 154,988 + GFF3314 0.61 -0.4 154,988 + GFF3314 0.61 +0.1 154,994 + GFF3314 0.61 -0.6 154,994 + GFF3314 0.61 +0.4 154,994 + GFF3314 0.61 +0.1 154,994 + GFF3314 0.61 -3.8 154,995 - GFF3314 0.61 +1.0 154,995 - GFF3314 0.61 -0.9 154,995 - GFF3314 0.61 -0.7 155,177 + GFF3314 0.75 +0.6 155,178 - GFF3314 0.75 -0.3 155,324 + GFF3314 0.86 -0.2 155,363 + GFF3314 0.89 -0.8 155,364 - GFF3314 0.89 -0.1 155,364 - GFF3314 0.89 -0.4 155,364 - GFF3314 0.89 +0.1 155,387 + +0.7 155,388 - -0.2 155,414 + -1.4 155,414 + -0.4 155,415 - -0.2 155,415 - +0.4 155,415 - -0.0 155,645 + GFF3315 0.14 -0.2 155,663 + GFF3315 0.16 +0.6 155,684 + GFF3315 0.18 +0.3 155,685 - GFF3315 0.18 -0.2 155,685 - GFF3315 0.18 -0.5 155,742 - GFF3315 0.24 +0.2 155,858 + GFF3315 0.36 +0.5 155,921 + GFF3315 0.43 +0.3 155,921 + GFF3315 0.43 -0.7 155,921 + GFF3315 0.43 -0.5 155,922 - GFF3315 0.43 +1.9 155,922 - GFF3315 0.43 -0.3 155,954 + GFF3315 0.46 -0.4 155,954 + GFF3315 0.46 -2.1 155,955 - GFF3315 0.46 -0.5 155,955 - GFF3315 0.46 -0.2 155,961 - GFF3315 0.47 -0.2 155,979 - GFF3315 0.49 +0.2 156,188 + GFF3315 0.71 +0.2 156,189 - GFF3315 0.71 +0.1 156,189 - GFF3315 0.71 -0.3 156,189 - GFF3315 0.71 -0.0 156,189 - GFF3315 0.71 +0.1 156,189 - GFF3315 0.71 +1.3 156,189 - GFF3315 0.71 +1.2 156,230 + GFF3315 0.75 +0.4 156,230 + GFF3315 0.75 -0.2 156,231 - GFF3315 0.75 -1.6 156,231 - GFF3315 0.75 -0.8 156,231 - GFF3315 0.75 -0.0 156,326 + GFF3315 0.85 +0.3 156,326 + GFF3315 0.85 +0.8 156,326 + GFF3315 0.85 +0.8 156,326 + GFF3315 0.85 -0.1 156,332 + GFF3315 0.86 -0.4 156,333 - GFF3315 0.86 +0.0 156,333 - GFF3315 0.86 +1.3 156,333 - GFF3315 0.86 -0.6 156,333 - GFF3315 0.86 +0.4 156,333 - GFF3315 0.86 +0.1
Or see this region's nucleotide sequence