Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3310 and GFF3311 are separated by 225 nucleotides GFF3311 and GFF3312 are separated by 2 nucleotides GFF3312 and GFF3313 are separated by 11 nucleotides
GFF3310 - 3-hydroxy-3-methylglutaryl-coenzyme A reductase, at 148,467 to 149,750
GFF3310
GFF3311 - HTH-type transcriptional regulator NorG, at 149,976 to 151,391
GFF3311
GFF3312 - 4-sulfomuconolactone hydrolase, at 151,394 to 152,272
GFF3312
GFF3313 - L-arabonate dehydratase, at 152,284 to 154,005
GFF3313
Position (kb) 149
150
151
152 Strain fitness (log2 ratio) -1
0
1 at 148.999 kb on + strand, within GFF3310 at 148.999 kb on + strand, within GFF3310 at 149.051 kb on + strand, within GFF3310 at 149.110 kb on + strand, within GFF3310 at 149.111 kb on - strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.226 kb on - strand, within GFF3310 at 149.441 kb on - strand, within GFF3310 at 149.528 kb on - strand, within GFF3310 at 149.996 kb on - strand at 150.121 kb on - strand, within GFF3311 at 150.153 kb on + strand, within GFF3311 at 150.154 kb on - strand, within GFF3311 at 150.154 kb on - strand, within GFF3311 at 150.154 kb on - strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.208 kb on - strand, within GFF3311 at 150.208 kb on - strand, within GFF3311 at 150.208 kb on - strand, within GFF3311 at 150.312 kb on + strand, within GFF3311 at 150.312 kb on + strand, within GFF3311 at 150.312 kb on + strand, within GFF3311 at 150.313 kb on - strand, within GFF3311 at 150.313 kb on - strand, within GFF3311 at 150.378 kb on + strand, within GFF3311 at 150.378 kb on + strand, within GFF3311 at 150.426 kb on + strand, within GFF3311 at 150.427 kb on - strand, within GFF3311 at 150.427 kb on - strand, within GFF3311 at 150.427 kb on - strand, within GFF3311 at 150.609 kb on + strand, within GFF3311 at 150.960 kb on + strand, within GFF3311 at 150.960 kb on + strand, within GFF3311 at 150.960 kb on + strand, within GFF3311 at 151.035 kb on + strand, within GFF3311 at 151.191 kb on + strand, within GFF3311 at 151.192 kb on - strand, within GFF3311 at 151.192 kb on - strand, within GFF3311 at 151.192 kb on - strand, within GFF3311 at 151.192 kb on - strand, within GFF3311 at 151.407 kb on + strand at 151.407 kb on + strand at 151.585 kb on - strand, within GFF3312 at 151.633 kb on - strand, within GFF3312 at 151.735 kb on + strand, within GFF3312 at 151.736 kb on - strand, within GFF3312 at 151.799 kb on + strand, within GFF3312 at 151.859 kb on + strand, within GFF3312 at 151.859 kb on + strand, within GFF3312 at 151.860 kb on - strand, within GFF3312 at 152.128 kb on - strand, within GFF3312 at 152.357 kb on + strand at 152.357 kb on + strand at 152.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 148,999 + GFF3310 0.41 -0.2 148,999 + GFF3310 0.41 -0.0 149,051 + GFF3310 0.45 +0.6 149,110 + GFF3310 0.50 -0.3 149,111 - GFF3310 0.50 +0.6 149,225 + GFF3310 0.59 -1.2 149,225 + GFF3310 0.59 -0.4 149,225 + GFF3310 0.59 +1.0 149,225 + GFF3310 0.59 -0.3 149,225 + GFF3310 0.59 +0.3 149,226 - GFF3310 0.59 +0.7 149,441 - GFF3310 0.76 +0.2 149,528 - GFF3310 0.83 +1.0 149,996 - -0.6 150,121 - GFF3311 0.10 -0.0 150,153 + GFF3311 0.12 +0.5 150,154 - GFF3311 0.13 -0.1 150,154 - GFF3311 0.13 -0.8 150,154 - GFF3311 0.13 +0.5 150,207 + GFF3311 0.16 +1.6 150,207 + GFF3311 0.16 +1.2 150,207 + GFF3311 0.16 -0.4 150,207 + GFF3311 0.16 +0.2 150,207 + GFF3311 0.16 -0.0 150,207 + GFF3311 0.16 -0.3 150,208 - GFF3311 0.16 +0.7 150,208 - GFF3311 0.16 -0.0 150,208 - GFF3311 0.16 -0.0 150,312 + GFF3311 0.24 -0.9 150,312 + GFF3311 0.24 -0.1 150,312 + GFF3311 0.24 +0.3 150,313 - GFF3311 0.24 +0.4 150,313 - GFF3311 0.24 +0.7 150,378 + GFF3311 0.28 -0.2 150,378 + GFF3311 0.28 -0.3 150,426 + GFF3311 0.32 +0.9 150,427 - GFF3311 0.32 +0.5 150,427 - GFF3311 0.32 -0.2 150,427 - GFF3311 0.32 +0.7 150,609 + GFF3311 0.45 +0.5 150,960 + GFF3311 0.69 -0.3 150,960 + GFF3311 0.69 -0.8 150,960 + GFF3311 0.69 +0.2 151,035 + GFF3311 0.75 +0.1 151,191 + GFF3311 0.86 +0.3 151,192 - GFF3311 0.86 +0.6 151,192 - GFF3311 0.86 -0.3 151,192 - GFF3311 0.86 -0.8 151,192 - GFF3311 0.86 +1.6 151,407 + -0.4 151,407 + +0.9 151,585 - GFF3312 0.22 -0.5 151,633 - GFF3312 0.27 +0.9 151,735 + GFF3312 0.39 -0.1 151,736 - GFF3312 0.39 +0.4 151,799 + GFF3312 0.46 -0.1 151,859 + GFF3312 0.53 +0.7 151,859 + GFF3312 0.53 +0.1 151,860 - GFF3312 0.53 +0.6 152,128 - GFF3312 0.84 -0.4 152,357 + +0.8 152,357 + -0.4 152,357 + +1.3
Or see this region's nucleotide sequence