Strain Fitness in Xanthobacter sp. DMC5 around GFF3238

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3237 and GFF3238 are separated by 251 nucleotidesGFF3238 and GFF3239 are separated by 301 nucleotides GFF3237 - Formyl-CoA:oxalate CoA-transferase, at 64,132 to 65,361 GFF3237 GFF3238 - hypothetical protein, at 65,613 to 66,083 GFF3238 GFF3239 - hypothetical protein, at 66,385 to 67,074 GFF3239 Position (kb) 65 66 67Strain fitness (log2 ratio) -1 0 1at 64.857 kb on + strand, within GFF3237at 64.949 kb on + strand, within GFF3237at 64.949 kb on + strand, within GFF3237at 64.949 kb on + strand, within GFF3237at 64.950 kb on - strand, within GFF3237at 64.950 kb on - strand, within GFF3237at 65.000 kb on + strand, within GFF3237at 65.000 kb on + strand, within GFF3237at 65.000 kb on + strand, within GFF3237at 65.000 kb on + strand, within GFF3237at 65.000 kb on + strand, within GFF3237at 65.001 kb on - strand, within GFF3237at 65.001 kb on - strand, within GFF3237at 65.001 kb on - strand, within GFF3237at 65.144 kb on + strand, within GFF3237at 65.151 kb on + strand, within GFF3237at 65.186 kb on + strand, within GFF3237at 65.187 kb on - strand, within GFF3237at 65.435 kb on + strandat 65.435 kb on + strandat 65.436 kb on - strandat 65.436 kb on - strandat 65.545 kb on + strandat 65.687 kb on + strand, within GFF3238at 65.692 kb on + strand, within GFF3238at 65.693 kb on - strand, within GFF3238at 65.693 kb on - strand, within GFF3238at 65.737 kb on + strand, within GFF3238at 65.737 kb on + strand, within GFF3238at 65.857 kb on - strand, within GFF3238at 65.857 kb on - strand, within GFF3238at 66.196 kb on + strandat 66.317 kb on - strandat 66.391 kb on + strandat 66.391 kb on + strandat 66.392 kb on - strandat 66.449 kb on - strandat 66.449 kb on - strandat 66.449 kb on - strandat 66.449 kb on - strandat 66.487 kb on + strand, within GFF3239at 66.487 kb on + strand, within GFF3239at 66.488 kb on - strand, within GFF3239at 66.488 kb on - strand, within GFF3239at 66.488 kb on - strand, within GFF3239at 66.666 kb on + strand, within GFF3239at 66.666 kb on + strand, within GFF3239at 66.800 kb on - strand, within GFF3239at 66.964 kb on - strand, within GFF3239at 66.964 kb on - strand, within GFF3239at 66.964 kb on - strand, within GFF3239at 67.023 kb on + strandat 67.072 kb on + strandat 67.073 kb on - strandat 67.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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64,857 + GFF3237 0.59 -0.6
64,949 + GFF3237 0.66 -0.4
64,949 + GFF3237 0.66 -0.4
64,949 + GFF3237 0.66 -0.0
64,950 - GFF3237 0.67 -0.1
64,950 - GFF3237 0.67 -0.1
65,000 + GFF3237 0.71 +0.2
65,000 + GFF3237 0.71 +1.2
65,000 + GFF3237 0.71 +0.3
65,000 + GFF3237 0.71 -0.0
65,000 + GFF3237 0.71 +0.0
65,001 - GFF3237 0.71 +0.4
65,001 - GFF3237 0.71 +1.4
65,001 - GFF3237 0.71 -0.2
65,144 + GFF3237 0.82 -0.0
65,151 + GFF3237 0.83 -0.9
65,186 + GFF3237 0.86 -0.7
65,187 - GFF3237 0.86 +0.7
65,435 + +1.4
65,435 + +0.5
65,436 - -0.5
65,436 - -0.5
65,545 + -0.0
65,687 + GFF3238 0.16 +0.6
65,692 + GFF3238 0.17 +0.7
65,693 - GFF3238 0.17 -0.3
65,693 - GFF3238 0.17 +0.8
65,737 + GFF3238 0.26 +0.5
65,737 + GFF3238 0.26 -0.3
65,857 - GFF3238 0.52 +0.4
65,857 - GFF3238 0.52 -0.1
66,196 + +0.6
66,317 - +0.6
66,391 + -0.4
66,391 + +0.4
66,392 - -0.2
66,449 - -0.2
66,449 - +0.2
66,449 - +0.2
66,449 - +0.1
66,487 + GFF3239 0.15 +0.5
66,487 + GFF3239 0.15 -0.7
66,488 - GFF3239 0.15 -0.0
66,488 - GFF3239 0.15 +0.2
66,488 - GFF3239 0.15 -0.9
66,666 + GFF3239 0.41 -0.1
66,666 + GFF3239 0.41 +0.4
66,800 - GFF3239 0.60 -0.3
66,964 - GFF3239 0.84 -1.0
66,964 - GFF3239 0.84 -0.5
66,964 - GFF3239 0.84 -0.6
67,023 + -1.1
67,072 + -0.7
67,073 - -0.1
67,073 - -0.1

Or see this region's nucleotide sequence