Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3229 and GFF3230 are separated by 232 nucleotides GFF3230 and GFF3231 are separated by 347 nucleotides GFF3231 and GFF3232 are separated by 8 nucleotides GFF3232 and GFF3233 are separated by 16 nucleotides
GFF3229 - hypothetical protein, at 55,253 to 55,528
GFF3229
GFF3230 - 30S ribosomal protein S21, at 55,761 to 55,991
GFF3230
GFF3231 - Glucose-6-phosphate 1-dehydrogenase, at 56,339 to 57,814
GFF3231
GFF3232 - 6-phosphogluconolactonase, at 57,823 to 58,533
GFF3232
GFF3233 - Glucose-6-phosphate isomerase, at 58,550 to 60,196
GFF3233
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1 at 56.606 kb on + strand, within GFF3231 at 56.606 kb on + strand, within GFF3231 at 56.606 kb on + strand, within GFF3231 at 56.606 kb on + strand, within GFF3231 at 56.607 kb on - strand, within GFF3231 at 56.607 kb on - strand, within GFF3231 at 56.693 kb on + strand, within GFF3231 at 56.694 kb on - strand, within GFF3231 at 56.879 kb on + strand, within GFF3231 at 56.879 kb on + strand, within GFF3231 at 56.879 kb on + strand, within GFF3231 at 56.880 kb on - strand, within GFF3231 at 56.880 kb on - strand, within GFF3231 at 56.880 kb on - strand, within GFF3231 at 57.023 kb on + strand, within GFF3231 at 57.023 kb on + strand, within GFF3231 at 57.344 kb on + strand, within GFF3231 at 57.610 kb on + strand, within GFF3231 at 57.610 kb on + strand, within GFF3231 at 57.610 kb on + strand, within GFF3231 at 57.610 kb on + strand, within GFF3231 at 57.611 kb on - strand, within GFF3231 at 57.611 kb on - strand, within GFF3231 at 57.611 kb on - strand, within GFF3231 at 57.611 kb on - strand, within GFF3231 at 57.734 kb on + strand at 58.144 kb on + strand, within GFF3232 at 58.145 kb on - strand, within GFF3232 at 58.254 kb on + strand, within GFF3232
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 56,606 + GFF3231 0.18 -1.4 56,606 + GFF3231 0.18 +0.1 56,606 + GFF3231 0.18 +0.9 56,606 + GFF3231 0.18 -2.0 56,607 - GFF3231 0.18 +0.9 56,607 - GFF3231 0.18 +0.7 56,693 + GFF3231 0.24 -0.1 56,694 - GFF3231 0.24 -0.3 56,879 + GFF3231 0.37 -0.4 56,879 + GFF3231 0.37 +0.1 56,879 + GFF3231 0.37 -0.2 56,880 - GFF3231 0.37 +0.3 56,880 - GFF3231 0.37 -0.1 56,880 - GFF3231 0.37 -0.4 57,023 + GFF3231 0.46 +0.1 57,023 + GFF3231 0.46 +0.3 57,344 + GFF3231 0.68 -0.3 57,610 + GFF3231 0.86 -0.5 57,610 + GFF3231 0.86 -0.4 57,610 + GFF3231 0.86 +0.6 57,610 + GFF3231 0.86 +0.3 57,611 - GFF3231 0.86 -0.6 57,611 - GFF3231 0.86 +0.2 57,611 - GFF3231 0.86 +0.6 57,611 - GFF3231 0.86 +0.0 57,734 + -0.2 58,144 + GFF3232 0.45 -0.1 58,145 - GFF3232 0.45 -0.6 58,254 + GFF3232 0.61 +0.1
Or see this region's nucleotide sequence