Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3194 and GFF3195 are separated by 298 nucleotides GFF3195 and GFF3196 are separated by 114 nucleotides GFF3196 and GFF3197 overlap by 4 nucleotides
GFF3194 - HTH-type transcriptional regulator ArgP, at 17,783 to 18,730
GFF3194
GFF3195 - Leu/Ile/Val-binding protein, at 19,029 to 20,231
GFF3195
GFF3196 - High-affinity branched-chain amino acid transport system permease protein LivH, at 20,346 to 21,221
GFF3196
GFF3197 - Vitamin B12 import ATP-binding protein BtuD, at 21,218 to 23,026
GFF3197
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1 at 18.292 kb on - strand, within GFF3194 at 18.371 kb on + strand, within GFF3194 at 18.372 kb on - strand, within GFF3194 at 18.537 kb on + strand, within GFF3194 at 18.538 kb on - strand, within GFF3194 at 18.709 kb on - strand at 18.794 kb on + strand at 18.911 kb on + strand at 18.953 kb on - strand at 18.954 kb on + strand at 18.954 kb on + strand at 18.954 kb on + strand at 18.955 kb on - strand at 19.007 kb on + strand at 19.269 kb on + strand, within GFF3195 at 19.269 kb on + strand, within GFF3195 at 19.269 kb on + strand, within GFF3195 at 19.270 kb on - strand, within GFF3195 at 19.413 kb on + strand, within GFF3195 at 19.413 kb on + strand, within GFF3195 at 19.413 kb on + strand, within GFF3195 at 19.413 kb on + strand, within GFF3195 at 19.413 kb on + strand, within GFF3195 at 19.414 kb on - strand, within GFF3195 at 19.414 kb on - strand, within GFF3195 at 19.566 kb on + strand, within GFF3195 at 19.566 kb on + strand, within GFF3195 at 19.566 kb on + strand, within GFF3195 at 19.878 kb on + strand, within GFF3195 at 19.878 kb on + strand, within GFF3195 at 19.878 kb on + strand, within GFF3195 at 19.878 kb on + strand, within GFF3195 at 19.879 kb on - strand, within GFF3195 at 19.879 kb on - strand, within GFF3195 at 19.996 kb on - strand, within GFF3195 at 20.007 kb on + strand, within GFF3195 at 20.007 kb on + strand, within GFF3195 at 20.007 kb on + strand, within GFF3195 at 20.008 kb on - strand, within GFF3195 at 20.073 kb on + strand, within GFF3195 at 20.073 kb on + strand, within GFF3195 at 20.074 kb on - strand, within GFF3195 at 20.164 kb on - strand at 20.164 kb on - strand at 20.166 kb on + strand at 20.167 kb on - strand at 20.221 kb on - strand at 20.364 kb on + strand at 20.364 kb on + strand at 20.364 kb on + strand at 20.364 kb on + strand at 20.364 kb on + strand at 20.364 kb on + strand at 20.364 kb on + strand at 20.365 kb on - strand at 20.365 kb on - strand at 20.365 kb on - strand at 20.365 kb on - strand at 20.397 kb on + strand at 20.398 kb on - strand at 20.398 kb on - strand at 20.398 kb on - strand at 20.499 kb on + strand, within GFF3196 at 20.499 kb on + strand, within GFF3196 at 20.499 kb on + strand, within GFF3196 at 20.500 kb on - strand, within GFF3196 at 20.694 kb on + strand, within GFF3196 at 21.115 kb on - strand, within GFF3196 at 21.115 kb on - strand, within GFF3196 at 21.115 kb on - strand, within GFF3196 at 21.115 kb on - strand, within GFF3196 at 21.115 kb on - strand, within GFF3196
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 18,292 - GFF3194 0.54 +1.4 18,371 + GFF3194 0.62 +1.6 18,372 - GFF3194 0.62 -0.1 18,537 + GFF3194 0.80 -0.8 18,538 - GFF3194 0.80 +0.8 18,709 - -0.5 18,794 + +0.5 18,911 + +0.9 18,953 - +1.2 18,954 + -1.5 18,954 + +0.2 18,954 + +0.6 18,955 - +0.6 19,007 + -1.0 19,269 + GFF3195 0.20 -0.2 19,269 + GFF3195 0.20 -0.2 19,269 + GFF3195 0.20 -0.5 19,270 - GFF3195 0.20 -0.4 19,413 + GFF3195 0.32 -0.5 19,413 + GFF3195 0.32 -0.2 19,413 + GFF3195 0.32 +0.1 19,413 + GFF3195 0.32 -0.0 19,413 + GFF3195 0.32 +1.1 19,414 - GFF3195 0.32 -0.7 19,414 - GFF3195 0.32 +0.2 19,566 + GFF3195 0.45 +0.1 19,566 + GFF3195 0.45 +0.2 19,566 + GFF3195 0.45 -0.0 19,878 + GFF3195 0.71 +1.1 19,878 + GFF3195 0.71 -0.6 19,878 + GFF3195 0.71 -0.6 19,878 + GFF3195 0.71 +1.1 19,879 - GFF3195 0.71 +0.0 19,879 - GFF3195 0.71 -0.6 19,996 - GFF3195 0.80 -0.0 20,007 + GFF3195 0.81 -0.2 20,007 + GFF3195 0.81 -0.3 20,007 + GFF3195 0.81 -0.4 20,008 - GFF3195 0.81 -1.9 20,073 + GFF3195 0.87 -0.2 20,073 + GFF3195 0.87 -0.6 20,074 - GFF3195 0.87 -0.7 20,164 - -0.8 20,164 - -0.2 20,166 + -1.2 20,167 - -0.2 20,221 - -0.3 20,364 + +0.6 20,364 + -0.2 20,364 + +0.8 20,364 + -0.2 20,364 + -1.0 20,364 + +0.4 20,364 + +1.6 20,365 - +0.8 20,365 - +0.1 20,365 - -0.2 20,365 - -0.6 20,397 + +0.1 20,398 - -0.3 20,398 - +0.3 20,398 - -0.6 20,499 + GFF3196 0.17 -0.8 20,499 + GFF3196 0.17 +0.2 20,499 + GFF3196 0.17 +0.2 20,500 - GFF3196 0.18 +0.0 20,694 + GFF3196 0.40 -0.6 21,115 - GFF3196 0.88 +0.2 21,115 - GFF3196 0.88 -0.1 21,115 - GFF3196 0.88 -0.3 21,115 - GFF3196 0.88 -0.5 21,115 - GFF3196 0.88 -0.3
Or see this region's nucleotide sequence