Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3189 and GFF3190 are separated by 894 nucleotides GFF3190 and GFF3191 are separated by 329 nucleotides
GFF3189 - hypothetical protein, at 10,388 to 10,993
GFF3189
GFF3190 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 11,888 to 12,745
GFF3190
GFF3191 - Sialic acid transporter NanT, at 13,075 to 14,742
GFF3191
Position (kb) 11
12
13 Strain fitness (log2 ratio) -1
0
1 at 10.953 kb on + strand at 10.959 kb on - strand at 11.106 kb on - strand at 11.106 kb on - strand at 11.106 kb on - strand at 11.227 kb on + strand at 11.228 kb on + strand at 11.229 kb on - strand at 11.229 kb on - strand at 11.229 kb on - strand at 11.481 kb on - strand at 11.481 kb on - strand at 12.048 kb on + strand, within GFF3190 at 12.050 kb on + strand, within GFF3190 at 12.051 kb on - strand, within GFF3190 at 12.051 kb on - strand, within GFF3190 at 12.051 kb on - strand, within GFF3190 at 12.692 kb on - strand at 12.692 kb on - strand at 12.810 kb on + strand at 12.810 kb on + strand at 12.811 kb on - strand at 12.811 kb on - strand at 12.811 kb on - strand at 12.830 kb on - strand at 13.067 kb on + strand at 13.067 kb on + strand at 13.067 kb on + strand at 13.068 kb on - strand at 13.068 kb on - strand at 13.068 kb on - strand at 13.068 kb on - strand at 13.177 kb on + strand at 13.177 kb on + strand at 13.178 kb on - strand at 13.178 kb on - strand at 13.186 kb on + strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.351 kb on + strand, within GFF3191 at 13.351 kb on + strand, within GFF3191 at 13.352 kb on - strand, within GFF3191 at 13.352 kb on - strand, within GFF3191 at 13.352 kb on - strand, within GFF3191 at 13.496 kb on - strand, within GFF3191 at 13.513 kb on + strand, within GFF3191 at 13.514 kb on - strand, within GFF3191 at 13.514 kb on - strand, within GFF3191 at 13.514 kb on - strand, within GFF3191 at 13.514 kb on - strand, within GFF3191 at 13.514 kb on - strand, within GFF3191 at 13.514 kb on - strand, within GFF3191 at 13.514 kb on - strand, within GFF3191 at 13.552 kb on + strand, within GFF3191 at 13.553 kb on - strand, within GFF3191 at 13.553 kb on - strand, within GFF3191
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 10,953 + +1.1 10,959 - +0.2 11,106 - +0.3 11,106 - +0.3 11,106 - +0.8 11,227 + -1.2 11,228 + +0.1 11,229 - -0.8 11,229 - -0.4 11,229 - -0.1 11,481 - -1.5 11,481 - -1.0 12,048 + GFF3190 0.19 +0.2 12,050 + GFF3190 0.19 -0.6 12,051 - GFF3190 0.19 -0.0 12,051 - GFF3190 0.19 +0.1 12,051 - GFF3190 0.19 +0.1 12,692 - +1.3 12,692 - +0.1 12,810 + +0.7 12,810 + +0.3 12,811 - +0.8 12,811 - +0.7 12,811 - +0.6 12,830 - +0.6 13,067 + +1.0 13,067 + -0.1 13,067 + +0.6 13,068 - +0.7 13,068 - +1.0 13,068 - +0.5 13,068 - +1.6 13,177 + +1.5 13,177 + -0.0 13,178 - +0.4 13,178 - +1.1 13,186 + +0.4 13,193 - +1.5 13,193 - +0.2 13,351 + GFF3191 0.17 +0.5 13,351 + GFF3191 0.17 +0.2 13,352 - GFF3191 0.17 -0.1 13,352 - GFF3191 0.17 +1.0 13,352 - GFF3191 0.17 +0.1 13,496 - GFF3191 0.25 +1.6 13,513 + GFF3191 0.26 +1.6 13,514 - GFF3191 0.26 +1.2 13,514 - GFF3191 0.26 -0.0 13,514 - GFF3191 0.26 +0.3 13,514 - GFF3191 0.26 +0.7 13,514 - GFF3191 0.26 -0.1 13,514 - GFF3191 0.26 +0.7 13,514 - GFF3191 0.26 +0.1 13,552 + GFF3191 0.29 +0.3 13,553 - GFF3191 0.29 -0.7 13,553 - GFF3191 0.29 +0.3
Or see this region's nucleotide sequence