Strain Fitness in Xanthobacter sp. DMC5 around GFF3185

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3183 and GFF3184 are separated by 13 nucleotidesGFF3184 and GFF3185 are separated by 9 nucleotidesGFF3185 and GFF3186 are separated by 18 nucleotides GFF3183 - hypothetical protein, at 2,390 to 5,161 GFF3183 GFF3184 - 4-hydroxybenzoyl-CoA reductase subunit gamma, at 5,175 to 5,690 GFF3184 GFF3185 - hypothetical protein, at 5,700 to 6,314 GFF3185 GFF3186 - hypothetical protein, at 6,333 to 7,430 GFF3186 Position (kb) 5 6 7Strain fitness (log2 ratio) -1 0 1at 4.703 kb on + strand, within GFF3183at 4.704 kb on - strand, within GFF3183at 4.704 kb on - strand, within GFF3183at 4.782 kb on + strand, within GFF3183at 4.799 kb on + strand, within GFF3183at 4.800 kb on - strand, within GFF3183at 4.883 kb on + strand, within GFF3183at 4.952 kb on + strandat 4.952 kb on + strandat 4.953 kb on - strandat 4.953 kb on - strandat 5.625 kb on + strand, within GFF3184at 5.625 kb on + strand, within GFF3184at 5.626 kb on - strand, within GFF3184at 5.634 kb on + strand, within GFF3184at 5.634 kb on + strand, within GFF3184at 6.034 kb on - strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.317 kb on + strandat 6.318 kb on - strandat 6.335 kb on + strandat 6.340 kb on - strandat 6.340 kb on - strandat 6.421 kb on - strandat 6.421 kb on - strandat 6.517 kb on - strand, within GFF3186at 6.517 kb on - strand, within GFF3186at 6.613 kb on - strand, within GFF3186at 6.660 kb on + strand, within GFF3186at 6.720 kb on + strand, within GFF3186at 6.720 kb on + strand, within GFF3186at 6.721 kb on - strand, within GFF3186at 6.728 kb on + strand, within GFF3186at 6.728 kb on + strand, within GFF3186at 6.740 kb on + strand, within GFF3186at 6.740 kb on + strand, within GFF3186at 6.768 kb on + strand, within GFF3186at 6.769 kb on - strand, within GFF3186at 6.769 kb on - strand, within GFF3186at 6.917 kb on - strand, within GFF3186at 6.917 kb on - strand, within GFF3186at 6.924 kb on + strand, within GFF3186at 6.925 kb on - strand, within GFF3186at 7.072 kb on - strand, within GFF3186at 7.072 kb on - strand, within GFF3186at 7.072 kb on - strand, within GFF3186at 7.116 kb on + strand, within GFF3186at 7.116 kb on + strand, within GFF3186at 7.117 kb on - strand, within GFF3186at 7.117 kb on - strand, within GFF3186at 7.270 kb on - strand, within GFF3186

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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4,703 + GFF3183 0.83 -1.0
4,704 - GFF3183 0.83 +0.8
4,704 - GFF3183 0.83 -0.7
4,782 + GFF3183 0.86 +0.2
4,799 + GFF3183 0.87 -0.2
4,800 - GFF3183 0.87 -0.1
4,883 + GFF3183 0.90 +0.3
4,952 + -1.2
4,952 + -1.0
4,953 - +0.7
4,953 - +0.3
5,625 + GFF3184 0.87 -0.4
5,625 + GFF3184 0.87 +1.3
5,626 - GFF3184 0.87 +0.7
5,634 + GFF3184 0.89 +1.3
5,634 + GFF3184 0.89 -0.4
6,034 - GFF3185 0.54 +0.1
6,118 + GFF3185 0.68 +0.1
6,118 + GFF3185 0.68 -0.4
6,118 + GFF3185 0.68 +0.3
6,118 + GFF3185 0.68 +0.5
6,118 + GFF3185 0.68 +0.6
6,119 - GFF3185 0.68 +0.2
6,119 - GFF3185 0.68 +1.3
6,119 - GFF3185 0.68 -1.0
6,119 - GFF3185 0.68 -0.3
6,119 - GFF3185 0.68 -0.8
6,317 + +0.7
6,318 - +0.8
6,335 + -0.6
6,340 - -0.7
6,340 - +0.2
6,421 - +0.0
6,421 - -0.7
6,517 - GFF3186 0.17 +0.4
6,517 - GFF3186 0.17 +0.8
6,613 - GFF3186 0.26 -0.7
6,660 + GFF3186 0.30 +0.5
6,720 + GFF3186 0.35 -0.3
6,720 + GFF3186 0.35 +0.1
6,721 - GFF3186 0.35 +0.4
6,728 + GFF3186 0.36 -0.9
6,728 + GFF3186 0.36 +0.4
6,740 + GFF3186 0.37 +0.6
6,740 + GFF3186 0.37 +1.6
6,768 + GFF3186 0.40 -0.1
6,769 - GFF3186 0.40 -0.0
6,769 - GFF3186 0.40 +0.2
6,917 - GFF3186 0.53 +0.5
6,917 - GFF3186 0.53 -0.6
6,924 + GFF3186 0.54 +0.6
6,925 - GFF3186 0.54 +0.7
7,072 - GFF3186 0.67 -1.2
7,072 - GFF3186 0.67 -0.0
7,072 - GFF3186 0.67 +0.4
7,116 + GFF3186 0.71 +0.2
7,116 + GFF3186 0.71 -0.3
7,117 - GFF3186 0.71 +0.3
7,117 - GFF3186 0.71 +0.6
7,270 - GFF3186 0.85 +0.1

Or see this region's nucleotide sequence