Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3172 and GFF3173 are separated by 94 nucleotides GFF3173 and GFF3174 are separated by 16 nucleotides GFF3174 and GFF3175 are separated by 73 nucleotides GFF3175 and GFF3176 are separated by 92 nucleotides
GFF3172 - hypothetical protein, at 912,242 to 912,841
GFF3172
GFF3173 - hypothetical protein, at 912,936 to 913,547
GFF3173
GFF3174 - hypothetical protein, at 913,564 to 914,418
GFF3174
GFF3175 - hypothetical protein, at 914,492 to 915,154
GFF3175
GFF3176 - hypothetical protein, at 915,247 to 915,630
GFF3176
Position (kb) 913
914
915 Strain fitness (log2 ratio) -1
0
1 at 912.716 kb on + strand, within GFF3172 at 912.717 kb on - strand, within GFF3172 at 912.824 kb on + strand at 912.891 kb on + strand at 912.893 kb on + strand at 912.894 kb on - strand at 912.894 kb on - strand at 912.894 kb on - strand at 913.083 kb on + strand, within GFF3173 at 913.084 kb on - strand, within GFF3173 at 913.135 kb on - strand, within GFF3173 at 913.135 kb on - strand, within GFF3173 at 913.398 kb on + strand, within GFF3173 at 913.400 kb on + strand, within GFF3173 at 913.401 kb on - strand, within GFF3173 at 913.421 kb on + strand, within GFF3173 at 913.422 kb on - strand, within GFF3173 at 913.422 kb on - strand, within GFF3173 at 913.422 kb on - strand, within GFF3173 at 913.470 kb on + strand, within GFF3173 at 913.471 kb on - strand, within GFF3173 at 913.479 kb on + strand, within GFF3173 at 913.480 kb on - strand, within GFF3173 at 913.864 kb on + strand, within GFF3174 at 913.864 kb on + strand, within GFF3174 at 913.864 kb on + strand, within GFF3174 at 914.416 kb on + strand at 914.417 kb on - strand at 914.475 kb on + strand at 914.476 kb on - strand at 914.476 kb on - strand at 914.877 kb on - strand, within GFF3175 at 914.877 kb on - strand, within GFF3175 at 915.152 kb on + strand at 915.153 kb on - strand at 915.289 kb on + strand, within GFF3176 at 915.290 kb on - strand, within GFF3176 at 915.290 kb on - strand, within GFF3176 at 915.379 kb on + strand, within GFF3176 at 915.379 kb on + strand, within GFF3176 at 915.379 kb on + strand, within GFF3176 at 915.379 kb on + strand, within GFF3176 at 915.379 kb on + strand, within GFF3176 at 915.380 kb on - strand, within GFF3176
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 912,716 + GFF3172 0.79 +1.2 912,717 - GFF3172 0.79 +0.8 912,824 + +0.3 912,891 + -0.5 912,893 + +0.0 912,894 - +0.5 912,894 - -1.1 912,894 - +0.5 913,083 + GFF3173 0.24 -0.5 913,084 - GFF3173 0.24 -0.2 913,135 - GFF3173 0.33 +0.3 913,135 - GFF3173 0.33 +0.4 913,398 + GFF3173 0.75 +0.6 913,400 + GFF3173 0.76 -0.2 913,401 - GFF3173 0.76 -0.1 913,421 + GFF3173 0.79 +0.4 913,422 - GFF3173 0.79 -0.0 913,422 - GFF3173 0.79 -0.3 913,422 - GFF3173 0.79 -0.1 913,470 + GFF3173 0.87 -0.6 913,471 - GFF3173 0.87 +0.4 913,479 + GFF3173 0.89 -0.3 913,480 - GFF3173 0.89 -0.6 913,864 + GFF3174 0.35 -0.9 913,864 + GFF3174 0.35 -0.2 913,864 + GFF3174 0.35 -0.4 914,416 + +0.1 914,417 - +0.3 914,475 + -0.5 914,476 - -1.1 914,476 - +1.1 914,877 - GFF3175 0.58 -0.0 914,877 - GFF3175 0.58 +0.5 915,152 + +0.7 915,153 - -0.0 915,289 + GFF3176 0.11 -0.5 915,290 - GFF3176 0.11 -0.1 915,290 - GFF3176 0.11 -1.6 915,379 + GFF3176 0.34 +0.3 915,379 + GFF3176 0.34 -0.0 915,379 + GFF3176 0.34 -0.7 915,379 + GFF3176 0.34 +0.1 915,379 + GFF3176 0.34 -0.5 915,380 - GFF3176 0.35 +0.5
Or see this region's nucleotide sequence