Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3150 and GFF3151 are separated by 71 nucleotides GFF3151 and GFF3152 overlap by 4 nucleotides GFF3152 and GFF3153 are separated by 323 nucleotides GFF3153 and GFF3154 are separated by 51 nucleotides
GFF3150 - hypothetical protein, at 886,089 to 886,880
GFF3150
GFF3151 - Aliphatic sulfonates import ATP-binding protein SsuB, at 886,952 to 887,698
GFF3151
GFF3152 - hypothetical protein, at 887,695 to 888,465
GFF3152
GFF3153 - hypothetical protein, at 888,789 to 889,295
GFF3153
GFF3154 - hypothetical protein, at 889,347 to 890,252
GFF3154
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1 at 887.451 kb on + strand, within GFF3151 at 887.451 kb on + strand, within GFF3151 at 887.451 kb on + strand, within GFF3151 at 887.451 kb on + strand, within GFF3151 at 887.451 kb on + strand, within GFF3151 at 887.452 kb on - strand, within GFF3151 at 887.452 kb on - strand, within GFF3151 at 887.452 kb on - strand, within GFF3151 at 887.452 kb on - strand, within GFF3151 at 887.502 kb on + strand, within GFF3151 at 887.502 kb on + strand, within GFF3151 at 887.502 kb on + strand, within GFF3151 at 887.855 kb on + strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 888.045 kb on + strand, within GFF3152 at 888.371 kb on + strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.614 kb on + strand at 888.642 kb on + strand at 888.880 kb on - strand, within GFF3153 at 888.880 kb on - strand, within GFF3153 at 889.086 kb on - strand, within GFF3153 at 889.154 kb on + strand, within GFF3153
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 887,451 + GFF3151 0.67 +0.6 887,451 + GFF3151 0.67 -0.4 887,451 + GFF3151 0.67 +0.7 887,451 + GFF3151 0.67 +0.7 887,451 + GFF3151 0.67 -0.2 887,452 - GFF3151 0.67 +0.3 887,452 - GFF3151 0.67 -0.5 887,452 - GFF3151 0.67 -0.7 887,452 - GFF3151 0.67 +0.1 887,502 + GFF3151 0.74 +1.0 887,502 + GFF3151 0.74 +0.4 887,502 + GFF3151 0.74 -1.1 887,855 + GFF3152 0.21 -0.4 887,856 - GFF3152 0.21 +0.6 887,856 - GFF3152 0.21 -0.1 887,856 - GFF3152 0.21 +0.6 887,856 - GFF3152 0.21 +0.7 888,045 + GFF3152 0.45 +0.3 888,371 + GFF3152 0.88 +0.1 888,372 - GFF3152 0.88 -0.2 888,372 - GFF3152 0.88 -0.0 888,372 - GFF3152 0.88 +1.0 888,372 - GFF3152 0.88 -0.6 888,614 + -0.2 888,642 + -2.1 888,880 - GFF3153 0.18 -0.6 888,880 - GFF3153 0.18 +0.7 889,086 - GFF3153 0.59 -0.3 889,154 + GFF3153 0.72 -0.2
Or see this region's nucleotide sequence