Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3149 and GFF3150 are separated by 121 nucleotides GFF3150 and GFF3151 are separated by 71 nucleotides GFF3151 and GFF3152 overlap by 4 nucleotides
GFF3149 - hypothetical protein, at 885,062 to 885,967
GFF3149
GFF3150 - hypothetical protein, at 886,089 to 886,880
GFF3150
GFF3151 - Aliphatic sulfonates import ATP-binding protein SsuB, at 886,952 to 887,698
GFF3151
GFF3152 - hypothetical protein, at 887,695 to 888,465
GFF3152
Position (kb) 886
887
888 Strain fitness (log2 ratio) -2
-1
0
1 at 886.040 kb on - strand at 886.241 kb on - strand, within GFF3150 at 886.351 kb on + strand, within GFF3150 at 886.351 kb on + strand, within GFF3150 at 886.352 kb on - strand, within GFF3150 at 886.352 kb on - strand, within GFF3150 at 886.640 kb on + strand, within GFF3150 at 886.640 kb on + strand, within GFF3150 at 886.641 kb on - strand, within GFF3150 at 886.669 kb on + strand, within GFF3150 at 886.669 kb on + strand, within GFF3150 at 886.669 kb on + strand, within GFF3150 at 887.451 kb on + strand, within GFF3151 at 887.451 kb on + strand, within GFF3151 at 887.451 kb on + strand, within GFF3151 at 887.451 kb on + strand, within GFF3151 at 887.451 kb on + strand, within GFF3151 at 887.452 kb on - strand, within GFF3151 at 887.452 kb on - strand, within GFF3151 at 887.452 kb on - strand, within GFF3151 at 887.452 kb on - strand, within GFF3151 at 887.502 kb on + strand, within GFF3151 at 887.502 kb on + strand, within GFF3151 at 887.502 kb on + strand, within GFF3151 at 887.855 kb on + strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 887.856 kb on - strand, within GFF3152 at 888.045 kb on + strand, within GFF3152 at 888.371 kb on + strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.372 kb on - strand, within GFF3152 at 888.614 kb on + strand at 888.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 886,040 - +0.6 886,241 - GFF3150 0.19 -0.8 886,351 + GFF3150 0.33 +0.3 886,351 + GFF3150 0.33 -0.3 886,352 - GFF3150 0.33 +0.4 886,352 - GFF3150 0.33 -0.1 886,640 + GFF3150 0.70 -0.3 886,640 + GFF3150 0.70 +0.5 886,641 - GFF3150 0.70 +0.3 886,669 + GFF3150 0.73 -0.1 886,669 + GFF3150 0.73 -0.1 886,669 + GFF3150 0.73 -0.0 887,451 + GFF3151 0.67 +0.6 887,451 + GFF3151 0.67 -0.4 887,451 + GFF3151 0.67 +0.7 887,451 + GFF3151 0.67 +0.7 887,451 + GFF3151 0.67 -0.2 887,452 - GFF3151 0.67 +0.3 887,452 - GFF3151 0.67 -0.5 887,452 - GFF3151 0.67 -0.7 887,452 - GFF3151 0.67 +0.1 887,502 + GFF3151 0.74 +1.0 887,502 + GFF3151 0.74 +0.4 887,502 + GFF3151 0.74 -1.1 887,855 + GFF3152 0.21 -0.4 887,856 - GFF3152 0.21 +0.6 887,856 - GFF3152 0.21 -0.1 887,856 - GFF3152 0.21 +0.6 887,856 - GFF3152 0.21 +0.7 888,045 + GFF3152 0.45 +0.3 888,371 + GFF3152 0.88 +0.1 888,372 - GFF3152 0.88 -0.2 888,372 - GFF3152 0.88 -0.0 888,372 - GFF3152 0.88 +1.0 888,372 - GFF3152 0.88 -0.6 888,614 + -0.2 888,642 + -2.1
Or see this region's nucleotide sequence