Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3145 and GFF3146 overlap by 4 nucleotides GFF3146 and GFF3147 are separated by 10 nucleotides GFF3147 and GFF3148 are separated by 9 nucleotides
GFF3145 - Long-chain-fatty-acid--CoA ligase, at 881,237 to 882,763
GFF3145
GFF3146 - hypothetical protein, at 882,760 to 883,542
GFF3146
GFF3147 - hypothetical protein, at 883,553 to 883,972
GFF3147
GFF3148 - Crotonyl-CoA reductase, at 883,982 to 884,998
GFF3148
Position (kb) 883
884 Strain fitness (log2 ratio) -1
0
1 at 882.553 kb on - strand, within GFF3145 at 882.553 kb on - strand, within GFF3145 at 882.553 kb on - strand, within GFF3145 at 883.082 kb on + strand, within GFF3146 at 883.126 kb on + strand, within GFF3146 at 883.127 kb on - strand, within GFF3146 at 883.142 kb on + strand, within GFF3146 at 883.143 kb on - strand, within GFF3146 at 883.203 kb on - strand, within GFF3146 at 883.203 kb on - strand, within GFF3146 at 883.394 kb on + strand, within GFF3146 at 883.575 kb on + strand at 883.576 kb on - strand at 883.576 kb on - strand at 883.576 kb on - strand at 883.707 kb on + strand, within GFF3147 at 883.707 kb on + strand, within GFF3147 at 883.813 kb on - strand, within GFF3147 at 884.133 kb on + strand, within GFF3148 at 884.133 kb on + strand, within GFF3148 at 884.178 kb on + strand, within GFF3148 at 884.316 kb on + strand, within GFF3148 at 884.317 kb on - strand, within GFF3148 at 884.317 kb on - strand, within GFF3148 at 884.317 kb on - strand, within GFF3148 at 884.317 kb on - strand, within GFF3148 at 884.317 kb on - strand, within GFF3148 at 884.341 kb on - strand, within GFF3148 at 884.367 kb on + strand, within GFF3148 at 884.379 kb on + strand, within GFF3148 at 884.563 kb on + strand, within GFF3148 at 884.563 kb on + strand, within GFF3148 at 884.563 kb on + strand, within GFF3148 at 884.563 kb on + strand, within GFF3148 at 884.563 kb on + strand, within GFF3148 at 884.564 kb on - strand, within GFF3148 at 884.564 kb on - strand, within GFF3148 at 884.580 kb on + strand, within GFF3148 at 884.662 kb on - strand, within GFF3148 at 884.862 kb on + strand, within GFF3148 at 884.862 kb on + strand, within GFF3148 at 884.862 kb on + strand, within GFF3148 at 884.862 kb on + strand, within GFF3148 at 884.863 kb on - strand, within GFF3148 at 884.926 kb on - strand at 884.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 882,553 - GFF3145 0.86 -0.2 882,553 - GFF3145 0.86 +0.2 882,553 - GFF3145 0.86 +0.3 883,082 + GFF3146 0.41 +0.2 883,126 + GFF3146 0.47 +0.9 883,127 - GFF3146 0.47 +0.2 883,142 + GFF3146 0.49 +0.0 883,143 - GFF3146 0.49 -1.0 883,203 - GFF3146 0.57 +0.5 883,203 - GFF3146 0.57 +0.5 883,394 + GFF3146 0.81 -0.8 883,575 + +0.2 883,576 - -0.3 883,576 - -0.4 883,576 - +0.7 883,707 + GFF3147 0.37 +0.0 883,707 + GFF3147 0.37 -0.3 883,813 - GFF3147 0.62 +0.2 884,133 + GFF3148 0.15 -0.4 884,133 + GFF3148 0.15 -0.0 884,178 + GFF3148 0.19 -0.0 884,316 + GFF3148 0.33 -0.7 884,317 - GFF3148 0.33 +0.8 884,317 - GFF3148 0.33 +1.3 884,317 - GFF3148 0.33 +0.7 884,317 - GFF3148 0.33 +0.3 884,317 - GFF3148 0.33 +1.5 884,341 - GFF3148 0.35 +1.4 884,367 + GFF3148 0.38 +0.1 884,379 + GFF3148 0.39 +0.5 884,563 + GFF3148 0.57 +0.2 884,563 + GFF3148 0.57 -0.7 884,563 + GFF3148 0.57 -0.9 884,563 + GFF3148 0.57 +0.5 884,563 + GFF3148 0.57 -0.7 884,564 - GFF3148 0.57 +0.6 884,564 - GFF3148 0.57 +1.4 884,580 + GFF3148 0.59 -0.4 884,662 - GFF3148 0.67 +1.0 884,862 + GFF3148 0.87 -0.1 884,862 + GFF3148 0.87 +1.0 884,862 + GFF3148 0.87 -0.7 884,862 + GFF3148 0.87 -0.5 884,863 - GFF3148 0.87 +0.8 884,926 - +0.4 884,926 - +0.9
Or see this region's nucleotide sequence