Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3117 and GFF3118 are separated by 87 nucleotides GFF3118 and GFF3119 are separated by 140 nucleotides GFF3119 and GFF3120 overlap by 104 nucleotides
GFF3117 - hypothetical protein, at 846,242 to 846,928
GFF3117
GFF3118 - hypothetical protein, at 847,016 to 847,693
GFF3118
GFF3119 - hypothetical protein, at 847,834 to 848,316
GFF3119
GFF3120 - Polyamine aminopropyltransferase, at 848,213 to 850,858
GFF3120
Position (kb) 847
848
849 Strain fitness (log2 ratio) -2
-1
0
1
2 at 847.194 kb on - strand, within GFF3118 at 847.241 kb on - strand, within GFF3118 at 847.416 kb on - strand, within GFF3118 at 847.416 kb on - strand, within GFF3118 at 847.583 kb on + strand, within GFF3118 at 847.584 kb on - strand, within GFF3118 at 847.663 kb on + strand at 847.664 kb on - strand at 848.116 kb on + strand, within GFF3119 at 848.116 kb on + strand, within GFF3119 at 848.116 kb on + strand, within GFF3119 at 848.116 kb on + strand, within GFF3119 at 848.117 kb on - strand, within GFF3119 at 848.117 kb on - strand, within GFF3119 at 848.117 kb on - strand, within GFF3119 at 848.225 kb on + strand at 848.226 kb on - strand at 848.285 kb on + strand at 848.285 kb on + strand at 848.286 kb on - strand at 848.353 kb on - strand at 848.464 kb on + strand at 848.465 kb on - strand at 848.466 kb on + strand at 848.467 kb on - strand at 848.467 kb on - strand at 848.488 kb on - strand, within GFF3120 at 849.048 kb on + strand, within GFF3120 at 849.048 kb on + strand, within GFF3120 at 849.048 kb on + strand, within GFF3120 at 849.049 kb on - strand, within GFF3120 at 849.049 kb on - strand, within GFF3120 at 849.049 kb on - strand, within GFF3120 at 849.072 kb on + strand, within GFF3120 at 849.169 kb on - strand, within GFF3120
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 847,194 - GFF3118 0.26 +0.2 847,241 - GFF3118 0.33 +0.5 847,416 - GFF3118 0.59 -0.1 847,416 - GFF3118 0.59 -0.2 847,583 + GFF3118 0.84 -2.0 847,584 - GFF3118 0.84 +0.0 847,663 + +0.3 847,664 - +1.1 848,116 + GFF3119 0.58 -0.6 848,116 + GFF3119 0.58 -0.4 848,116 + GFF3119 0.58 +0.2 848,116 + GFF3119 0.58 +1.8 848,117 - GFF3119 0.59 +0.2 848,117 - GFF3119 0.59 +1.2 848,117 - GFF3119 0.59 -0.6 848,225 + -0.3 848,226 - -0.1 848,285 + -0.4 848,285 + -0.3 848,286 - +0.3 848,353 - -0.9 848,464 + +0.4 848,465 - -0.6 848,466 + +0.9 848,467 - -1.2 848,467 - +1.5 848,488 - GFF3120 0.10 -1.2 849,048 + GFF3120 0.32 -0.6 849,048 + GFF3120 0.32 +0.6 849,048 + GFF3120 0.32 -0.5 849,049 - GFF3120 0.32 +0.8 849,049 - GFF3120 0.32 -0.2 849,049 - GFF3120 0.32 -0.6 849,072 + GFF3120 0.32 +1.7 849,169 - GFF3120 0.36 +0.0
Or see this region's nucleotide sequence