Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3105 and GFF3106 are separated by 3 nucleotides GFF3106 and GFF3107 are separated by 8 nucleotides GFF3107 and GFF3108 are separated by 528 nucleotides
GFF3105 - hypothetical protein, at 834,576 to 835,172
GFF3105
GFF3106 - hypothetical protein, at 835,176 to 835,820
GFF3106
GFF3107 - Secretin XpsD, at 835,829 to 838,057
GFF3107
GFF3108 - Type II secretion system protein E, at 838,586 to 840,259
GFF3108
Position (kb) 835
836
837
838
839 Strain fitness (log2 ratio) -1
0
1 at 834.878 kb on - strand, within GFF3105 at 834.935 kb on - strand, within GFF3105 at 835.021 kb on + strand, within GFF3105 at 835.303 kb on + strand, within GFF3106 at 835.534 kb on + strand, within GFF3106 at 835.534 kb on + strand, within GFF3106 at 835.534 kb on + strand, within GFF3106 at 835.534 kb on + strand, within GFF3106 at 835.535 kb on - strand, within GFF3106 at 835.535 kb on - strand, within GFF3106 at 835.535 kb on - strand, within GFF3106 at 835.535 kb on - strand, within GFF3106 at 836.222 kb on - strand, within GFF3107 at 836.718 kb on + strand, within GFF3107 at 836.718 kb on + strand, within GFF3107 at 836.719 kb on - strand, within GFF3107 at 836.737 kb on - strand, within GFF3107 at 836.737 kb on - strand, within GFF3107 at 837.486 kb on + strand, within GFF3107 at 837.487 kb on - strand, within GFF3107 at 837.487 kb on - strand, within GFF3107 at 837.648 kb on + strand, within GFF3107 at 837.649 kb on - strand, within GFF3107 at 837.649 kb on - strand, within GFF3107 at 838.233 kb on + strand at 838.233 kb on + strand at 838.233 kb on + strand at 838.234 kb on - strand at 838.234 kb on - strand at 838.235 kb on + strand at 838.355 kb on + strand at 838.355 kb on + strand at 838.355 kb on + strand at 838.766 kb on - strand, within GFF3108
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 834,878 - GFF3105 0.51 +0.6 834,935 - GFF3105 0.60 -0.5 835,021 + GFF3105 0.75 -0.8 835,303 + GFF3106 0.20 +0.2 835,534 + GFF3106 0.56 +0.4 835,534 + GFF3106 0.56 -0.6 835,534 + GFF3106 0.56 -0.4 835,534 + GFF3106 0.56 +1.3 835,535 - GFF3106 0.56 +0.3 835,535 - GFF3106 0.56 +0.4 835,535 - GFF3106 0.56 +0.2 835,535 - GFF3106 0.56 -0.3 836,222 - GFF3107 0.18 -0.8 836,718 + GFF3107 0.40 -0.1 836,718 + GFF3107 0.40 +1.4 836,719 - GFF3107 0.40 -0.1 836,737 - GFF3107 0.41 +0.4 836,737 - GFF3107 0.41 +0.4 837,486 + GFF3107 0.74 +0.8 837,487 - GFF3107 0.74 -0.1 837,487 - GFF3107 0.74 -0.5 837,648 + GFF3107 0.82 +0.3 837,649 - GFF3107 0.82 +1.5 837,649 - GFF3107 0.82 -0.1 838,233 + -0.8 838,233 + -0.9 838,233 + -0.3 838,234 - +0.7 838,234 - -0.8 838,235 + -0.5 838,355 + +1.0 838,355 + +0.4 838,355 + +0.4 838,766 - GFF3108 0.11 +0.3
Or see this region's nucleotide sequence