Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3088 and GFF3089 are separated by 38 nucleotides GFF3089 and GFF3090 are separated by 173 nucleotides
GFF3088 - hypothetical protein, at 818,088 to 818,720
GFF3088
GFF3089 - Putative amino-acid ABC transporter-binding protein YhdW, at 818,759 to 819,772
GFF3089
GFF3090 - hypothetical protein, at 819,946 to 820,977
GFF3090
Position (kb) 818
819
820 Strain fitness (log2 ratio) -1
0
1 at 818.058 kb on + strand at 818.058 kb on + strand at 818.290 kb on - strand, within GFF3088 at 818.316 kb on - strand, within GFF3088 at 818.350 kb on - strand, within GFF3088 at 818.383 kb on - strand, within GFF3088 at 818.497 kb on - strand, within GFF3088 at 818.497 kb on - strand, within GFF3088 at 818.497 kb on - strand, within GFF3088 at 818.554 kb on - strand, within GFF3088 at 818.554 kb on - strand, within GFF3088 at 818.554 kb on - strand, within GFF3088 at 818.665 kb on - strand at 818.665 kb on - strand at 818.779 kb on - strand at 818.990 kb on + strand, within GFF3089 at 818.990 kb on + strand, within GFF3089 at 818.991 kb on - strand, within GFF3089 at 818.991 kb on - strand, within GFF3089 at 818.991 kb on - strand, within GFF3089 at 819.119 kb on + strand, within GFF3089 at 819.119 kb on + strand, within GFF3089 at 819.120 kb on - strand, within GFF3089 at 819.120 kb on - strand, within GFF3089 at 819.122 kb on + strand, within GFF3089 at 819.123 kb on - strand, within GFF3089 at 819.308 kb on + strand, within GFF3089 at 819.309 kb on - strand, within GFF3089 at 819.356 kb on + strand, within GFF3089 at 819.356 kb on + strand, within GFF3089 at 819.357 kb on - strand, within GFF3089 at 819.357 kb on - strand, within GFF3089 at 819.488 kb on + strand, within GFF3089 at 819.489 kb on - strand, within GFF3089 at 819.489 kb on - strand, within GFF3089 at 819.596 kb on + strand, within GFF3089 at 819.596 kb on + strand, within GFF3089 at 819.659 kb on + strand, within GFF3089 at 819.660 kb on - strand, within GFF3089 at 819.909 kb on + strand at 819.910 kb on - strand at 819.910 kb on - strand at 819.982 kb on - strand at 820.129 kb on + strand, within GFF3090 at 820.129 kb on + strand, within GFF3090 at 820.130 kb on - strand, within GFF3090 at 820.135 kb on + strand, within GFF3090 at 820.136 kb on - strand, within GFF3090 at 820.136 kb on - strand, within GFF3090 at 820.255 kb on + strand, within GFF3090 at 820.283 kb on - strand, within GFF3090 at 820.449 kb on + strand, within GFF3090 at 820.450 kb on - strand, within GFF3090 at 820.634 kb on - strand, within GFF3090 at 820.690 kb on - strand, within GFF3090 at 820.690 kb on - strand, within GFF3090 at 820.701 kb on + strand, within GFF3090
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 818,058 + -1.1 818,058 + +0.7 818,290 - GFF3088 0.32 +0.3 818,316 - GFF3088 0.36 +0.3 818,350 - GFF3088 0.41 -0.5 818,383 - GFF3088 0.47 +0.4 818,497 - GFF3088 0.65 +0.5 818,497 - GFF3088 0.65 +0.4 818,497 - GFF3088 0.65 -0.1 818,554 - GFF3088 0.74 -0.4 818,554 - GFF3088 0.74 -0.6 818,554 - GFF3088 0.74 +0.7 818,665 - -0.3 818,665 - +0.6 818,779 - +0.4 818,990 + GFF3089 0.23 -0.3 818,990 + GFF3089 0.23 +0.2 818,991 - GFF3089 0.23 +0.5 818,991 - GFF3089 0.23 +1.6 818,991 - GFF3089 0.23 -0.6 819,119 + GFF3089 0.36 +1.5 819,119 + GFF3089 0.36 +0.0 819,120 - GFF3089 0.36 +0.5 819,120 - GFF3089 0.36 -0.6 819,122 + GFF3089 0.36 +0.1 819,123 - GFF3089 0.36 -0.2 819,308 + GFF3089 0.54 -0.6 819,309 - GFF3089 0.54 -0.5 819,356 + GFF3089 0.59 +0.1 819,356 + GFF3089 0.59 -0.4 819,357 - GFF3089 0.59 +0.4 819,357 - GFF3089 0.59 -0.6 819,488 + GFF3089 0.72 -0.2 819,489 - GFF3089 0.72 +1.3 819,489 - GFF3089 0.72 -0.1 819,596 + GFF3089 0.83 -1.1 819,596 + GFF3089 0.83 +0.5 819,659 + GFF3089 0.89 -0.1 819,660 - GFF3089 0.89 +0.4 819,909 + -0.2 819,910 - -0.5 819,910 - +0.3 819,982 - +0.9 820,129 + GFF3090 0.18 -1.3 820,129 + GFF3090 0.18 -0.2 820,130 - GFF3090 0.18 -0.5 820,135 + GFF3090 0.18 -0.4 820,136 - GFF3090 0.18 -0.6 820,136 - GFF3090 0.18 -0.5 820,255 + GFF3090 0.30 -0.2 820,283 - GFF3090 0.33 +0.7 820,449 + GFF3090 0.49 -0.3 820,450 - GFF3090 0.49 +0.4 820,634 - GFF3090 0.67 -0.8 820,690 - GFF3090 0.72 -0.9 820,690 - GFF3090 0.72 +1.0 820,701 + GFF3090 0.73 +0.2
Or see this region's nucleotide sequence