Strain Fitness in Xanthobacter sp. DMC5 around GFF3076

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3075 and GFF3076 are separated by 22 nucleotidesGFF3076 and GFF3077 are separated by 97 nucleotidesGFF3077 and GFF3078 overlap by 4 nucleotides GFF3075 - Endonuclease III, at 807,149 to 808,096 GFF3075 GFF3076 - hypothetical protein, at 808,119 to 808,658 GFF3076 GFF3077 - Anti-sigma-E factor ChrR, at 808,756 to 809,451 GFF3077 GFF3078 - ECF RNA polymerase sigma factor RpoE, at 809,448 to 810,029 GFF3078 Position (kb) 808 809Strain fitness (log2 ratio) -1 0 1 2at 808.108 kb on - strandat 808.188 kb on + strand, within GFF3076at 808.188 kb on + strand, within GFF3076at 808.188 kb on + strand, within GFF3076at 808.189 kb on - strand, within GFF3076at 808.347 kb on + strand, within GFF3076at 808.885 kb on + strand, within GFF3077at 808.885 kb on + strand, within GFF3077at 808.885 kb on + strand, within GFF3077at 808.886 kb on - strand, within GFF3077at 808.904 kb on + strand, within GFF3077at 809.408 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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808,108 - +0.4
808,188 + GFF3076 0.13 -1.1
808,188 + GFF3076 0.13 -0.3
808,188 + GFF3076 0.13 -1.4
808,189 - GFF3076 0.13 +1.8
808,347 + GFF3076 0.42 -0.7
808,885 + GFF3077 0.19 +1.1
808,885 + GFF3077 0.19 -0.6
808,885 + GFF3077 0.19 +0.5
808,886 - GFF3077 0.19 +0.3
808,904 + GFF3077 0.21 +0.7
809,408 + +0.2

Or see this region's nucleotide sequence