Strain Fitness in Xanthobacter sp. DMC5 around GFF3058

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3057 and GFF3058 are separated by 423 nucleotidesGFF3058 and GFF3059 are separated by 279 nucleotidesGFF3059 and GFF3060 are separated by 139 nucleotides GFF3057 - hypothetical protein, at 786,834 to 787,049 GFF3057 GFF3058 - N-acetylmuramic acid 6-phosphate phosphatase, at 787,473 to 788,189 GFF3058 GFF3059 - hypothetical protein, at 788,469 to 788,936 GFF3059 GFF3060 - Ribose-5-phosphate isomerase A, at 789,076 to 789,783 GFF3060 Position (kb) 787 788 789Strain fitness (log2 ratio) -1 0 1at 786.585 kb on - strandat 786.588 kb on + strandat 786.707 kb on + strandat 786.729 kb on + strandat 786.730 kb on - strandat 786.995 kb on + strand, within GFF3057at 787.080 kb on - strandat 787.121 kb on + strandat 787.232 kb on - strandat 787.232 kb on - strandat 787.238 kb on + strandat 787.239 kb on - strandat 787.245 kb on - strandat 787.245 kb on - strandat 787.729 kb on + strand, within GFF3058at 787.730 kb on - strand, within GFF3058at 787.730 kb on - strand, within GFF3058at 787.730 kb on - strand, within GFF3058at 787.912 kb on + strand, within GFF3058at 788.304 kb on - strandat 788.442 kb on - strandat 788.659 kb on - strand, within GFF3059at 788.785 kb on - strand, within GFF3059at 788.805 kb on + strand, within GFF3059at 788.806 kb on - strand, within GFF3059at 788.866 kb on - strand, within GFF3059at 788.975 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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786,585 - -0.0
786,588 + +0.3
786,707 + -0.3
786,729 + +0.4
786,730 - +0.2
786,995 + GFF3057 0.75 +1.7
787,080 - -0.7
787,121 + -1.7
787,232 - -0.0
787,232 - -0.5
787,238 + +0.2
787,239 - -1.1
787,245 - +0.2
787,245 - +0.5
787,729 + GFF3058 0.36 +0.6
787,730 - GFF3058 0.36 +1.1
787,730 - GFF3058 0.36 -0.6
787,730 - GFF3058 0.36 +0.7
787,912 + GFF3058 0.61 +0.9
788,304 - -0.5
788,442 - -0.7
788,659 - GFF3059 0.41 -0.1
788,785 - GFF3059 0.68 -0.4
788,805 + GFF3059 0.72 +1.1
788,806 - GFF3059 0.72 -0.0
788,866 - GFF3059 0.85 -0.1
788,975 - -0.0

Or see this region's nucleotide sequence