Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3033 and GFF3034 overlap by 4 nucleotides GFF3034 and GFF3035 are separated by 448 nucleotides
GFF3033 - hypothetical protein, at 757,374 to 758,882
GFF3033
GFF3034 - Transcriptional activator protein ExaE, at 758,879 to 759,532
GFF3034
GFF3035 - 26 kDa periplasmic immunogenic protein, at 759,981 to 760,733
GFF3035
Position (kb) 758
759
760 Strain fitness (log2 ratio) -1
0
1 at 758.158 kb on - strand, within GFF3033 at 758.158 kb on - strand, within GFF3033 at 758.410 kb on + strand, within GFF3033 at 758.411 kb on - strand, within GFF3033 at 758.411 kb on - strand, within GFF3033 at 758.489 kb on + strand, within GFF3033 at 758.509 kb on - strand, within GFF3033 at 758.535 kb on + strand, within GFF3033 at 758.817 kb on - strand at 758.817 kb on - strand at 758.846 kb on + strand at 758.847 kb on - strand at 759.128 kb on - strand, within GFF3034 at 759.128 kb on - strand, within GFF3034 at 759.251 kb on + strand, within GFF3034 at 759.251 kb on + strand, within GFF3034 at 759.252 kb on - strand, within GFF3034 at 759.375 kb on - strand, within GFF3034 at 759.495 kb on - strand at 759.495 kb on - strand at 759.530 kb on + strand at 759.530 kb on + strand at 759.530 kb on + strand at 759.530 kb on + strand at 759.530 kb on + strand at 759.531 kb on - strand at 759.531 kb on - strand at 759.531 kb on - strand at 759.531 kb on - strand at 759.561 kb on - strand at 759.561 kb on - strand at 759.652 kb on - strand at 759.873 kb on + strand at 759.974 kb on + strand at 760.145 kb on + strand, within GFF3035 at 760.145 kb on + strand, within GFF3035 at 760.146 kb on - strand, within GFF3035 at 760.311 kb on + strand, within GFF3035
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 758,158 - GFF3033 0.52 +1.3 758,158 - GFF3033 0.52 +0.2 758,410 + GFF3033 0.69 +1.3 758,411 - GFF3033 0.69 +1.5 758,411 - GFF3033 0.69 +0.3 758,489 + GFF3033 0.74 +0.1 758,509 - GFF3033 0.75 +0.0 758,535 + GFF3033 0.77 +0.1 758,817 - +0.5 758,817 - +0.7 758,846 + +0.2 758,847 - +0.9 759,128 - GFF3034 0.38 +0.6 759,128 - GFF3034 0.38 +0.2 759,251 + GFF3034 0.57 +1.5 759,251 + GFF3034 0.57 +1.2 759,252 - GFF3034 0.57 +0.3 759,375 - GFF3034 0.76 +0.7 759,495 - +1.0 759,495 - +1.2 759,530 + -0.5 759,530 + +0.9 759,530 + +0.9 759,530 + +0.2 759,530 + -0.5 759,531 - +0.0 759,531 - -0.8 759,531 - +0.1 759,531 - -0.6 759,561 - -0.2 759,561 - -0.1 759,652 - -0.1 759,873 + +0.3 759,974 + -0.6 760,145 + GFF3035 0.22 +0.1 760,145 + GFF3035 0.22 +0.1 760,146 - GFF3035 0.22 +0.5 760,311 + GFF3035 0.44 +1.7
Or see this region's nucleotide sequence