Strain Fitness in Xanthobacter sp. DMC5 around GFF2992

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2991 and GFF2992 are separated by 634 nucleotidesGFF2992 and GFF2993 are separated by 56 nucleotidesGFF2993 and GFF2994 overlap by 1 nucleotides GFF2991 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 717,315 to 718,535 GFF2991 GFF2992 - Vitamin B12 transporter BtuB, at 719,170 to 721,143 GFF2992 GFF2993 - hypothetical protein, at 721,200 to 722,078 GFF2993 GFF2994 - Hemin transport system permease protein HmuU, at 722,078 to 723,064 GFF2994 Position (kb) 719 720 721 722Strain fitness (log2 ratio) -2 -1 0 1at 718.184 kb on - strand, within GFF2991at 718.184 kb on - strand, within GFF2991at 718.222 kb on + strand, within GFF2991at 718.581 kb on - strandat 718.650 kb on + strandat 718.651 kb on - strandat 718.717 kb on + strandat 718.867 kb on + strandat 718.868 kb on - strandat 718.956 kb on + strandat 718.957 kb on - strandat 719.503 kb on + strand, within GFF2992at 719.629 kb on + strand, within GFF2992at 719.740 kb on + strand, within GFF2992at 719.741 kb on - strand, within GFF2992at 719.776 kb on + strand, within GFF2992at 719.776 kb on + strand, within GFF2992at 719.777 kb on - strand, within GFF2992at 719.811 kb on + strand, within GFF2992at 719.869 kb on + strand, within GFF2992at 719.884 kb on + strand, within GFF2992at 719.884 kb on + strand, within GFF2992at 719.884 kb on + strand, within GFF2992at 719.884 kb on + strand, within GFF2992at 719.944 kb on + strand, within GFF2992at 719.945 kb on - strand, within GFF2992at 719.945 kb on - strand, within GFF2992at 719.980 kb on + strand, within GFF2992at 719.981 kb on - strand, within GFF2992at 719.981 kb on - strand, within GFF2992at 720.032 kb on - strand, within GFF2992at 720.114 kb on + strand, within GFF2992at 720.114 kb on + strand, within GFF2992at 720.114 kb on + strand, within GFF2992at 720.114 kb on + strand, within GFF2992at 720.115 kb on - strand, within GFF2992at 720.115 kb on - strand, within GFF2992at 720.115 kb on - strand, within GFF2992at 720.167 kb on - strand, within GFF2992at 720.167 kb on - strand, within GFF2992at 720.188 kb on - strand, within GFF2992at 720.188 kb on - strand, within GFF2992at 720.188 kb on - strand, within GFF2992at 720.188 kb on - strand, within GFF2992at 720.188 kb on - strand, within GFF2992at 720.190 kb on + strand, within GFF2992at 720.190 kb on + strand, within GFF2992at 720.190 kb on + strand, within GFF2992at 720.190 kb on + strand, within GFF2992at 720.190 kb on + strand, within GFF2992at 720.191 kb on - strand, within GFF2992at 720.191 kb on - strand, within GFF2992at 720.191 kb on - strand, within GFF2992at 720.206 kb on - strand, within GFF2992at 720.206 kb on - strand, within GFF2992at 720.281 kb on - strand, within GFF2992at 720.281 kb on - strand, within GFF2992at 720.320 kb on - strand, within GFF2992at 720.328 kb on + strand, within GFF2992at 720.329 kb on - strand, within GFF2992at 720.469 kb on + strand, within GFF2992at 720.469 kb on + strand, within GFF2992at 720.470 kb on - strand, within GFF2992at 720.500 kb on - strand, within GFF2992at 720.500 kb on - strand, within GFF2992at 720.508 kb on + strand, within GFF2992at 720.518 kb on - strand, within GFF2992at 720.520 kb on + strand, within GFF2992at 720.520 kb on + strand, within GFF2992at 720.520 kb on + strand, within GFF2992at 720.521 kb on - strand, within GFF2992at 720.521 kb on - strand, within GFF2992at 720.521 kb on - strand, within GFF2992at 720.616 kb on + strand, within GFF2992at 720.617 kb on - strand, within GFF2992at 720.649 kb on + strand, within GFF2992at 720.649 kb on + strand, within GFF2992at 720.650 kb on - strand, within GFF2992at 720.650 kb on - strand, within GFF2992at 720.665 kb on - strand, within GFF2992at 720.757 kb on + strand, within GFF2992at 720.757 kb on + strand, within GFF2992at 720.757 kb on + strand, within GFF2992at 720.757 kb on + strand, within GFF2992at 720.758 kb on - strand, within GFF2992at 720.758 kb on - strand, within GFF2992at 720.758 kb on - strand, within GFF2992at 720.763 kb on + strand, within GFF2992at 720.763 kb on + strand, within GFF2992at 720.763 kb on + strand, within GFF2992at 720.764 kb on - strand, within GFF2992at 720.764 kb on - strand, within GFF2992at 720.781 kb on + strand, within GFF2992at 720.781 kb on + strand, within GFF2992at 720.841 kb on + strand, within GFF2992at 720.928 kb on + strand, within GFF2992at 720.929 kb on - strand, within GFF2992at 720.929 kb on - strand, within GFF2992at 720.988 kb on + strandat 720.989 kb on - strandat 720.989 kb on - strandat 720.990 kb on + strandat 721.075 kb on + strandat 721.075 kb on + strandat 721.470 kb on + strand, within GFF2993at 721.470 kb on + strand, within GFF2993at 721.557 kb on + strand, within GFF2993at 721.558 kb on - strand, within GFF2993at 721.558 kb on - strand, within GFF2993at 721.558 kb on - strand, within GFF2993at 721.558 kb on - strand, within GFF2993at 721.613 kb on - strand, within GFF2993

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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718,184 - GFF2991 0.71 -1.0
718,184 - GFF2991 0.71 -0.5
718,222 + GFF2991 0.74 -0.3
718,581 - +0.4
718,650 + -0.2
718,651 - -1.3
718,717 + +0.0
718,867 + +0.9
718,868 - +0.2
718,956 + +0.1
718,957 - +0.1
719,503 + GFF2992 0.17 +0.3
719,629 + GFF2992 0.23 +0.3
719,740 + GFF2992 0.29 -1.2
719,741 - GFF2992 0.29 -1.3
719,776 + GFF2992 0.31 +0.2
719,776 + GFF2992 0.31 +0.2
719,777 - GFF2992 0.31 +0.0
719,811 + GFF2992 0.32 +0.3
719,869 + GFF2992 0.35 -0.1
719,884 + GFF2992 0.36 -0.4
719,884 + GFF2992 0.36 -0.4
719,884 + GFF2992 0.36 -1.3
719,884 + GFF2992 0.36 -0.6
719,944 + GFF2992 0.39 +0.1
719,945 - GFF2992 0.39 -0.6
719,945 - GFF2992 0.39 -0.4
719,980 + GFF2992 0.41 -1.3
719,981 - GFF2992 0.41 +1.5
719,981 - GFF2992 0.41 -0.1
720,032 - GFF2992 0.44 -1.1
720,114 + GFF2992 0.48 +0.2
720,114 + GFF2992 0.48 +0.3
720,114 + GFF2992 0.48 -0.1
720,114 + GFF2992 0.48 +0.4
720,115 - GFF2992 0.48 -0.9
720,115 - GFF2992 0.48 +0.1
720,115 - GFF2992 0.48 -0.4
720,167 - GFF2992 0.51 -0.4
720,167 - GFF2992 0.51 -1.2
720,188 - GFF2992 0.52 +0.1
720,188 - GFF2992 0.52 -0.0
720,188 - GFF2992 0.52 -0.7
720,188 - GFF2992 0.52 -0.3
720,188 - GFF2992 0.52 +1.0
720,190 + GFF2992 0.52 -0.2
720,190 + GFF2992 0.52 -0.5
720,190 + GFF2992 0.52 +0.3
720,190 + GFF2992 0.52 +0.2
720,190 + GFF2992 0.52 -0.8
720,191 - GFF2992 0.52 +0.1
720,191 - GFF2992 0.52 -1.1
720,191 - GFF2992 0.52 -0.5
720,206 - GFF2992 0.52 +0.6
720,206 - GFF2992 0.52 +0.4
720,281 - GFF2992 0.56 +0.3
720,281 - GFF2992 0.56 +0.2
720,320 - GFF2992 0.58 -0.3
720,328 + GFF2992 0.59 -0.9
720,329 - GFF2992 0.59 +0.6
720,469 + GFF2992 0.66 +0.0
720,469 + GFF2992 0.66 +0.5
720,470 - GFF2992 0.66 +0.2
720,500 - GFF2992 0.67 +0.8
720,500 - GFF2992 0.67 -0.3
720,508 + GFF2992 0.68 -1.3
720,518 - GFF2992 0.68 -1.0
720,520 + GFF2992 0.68 -1.3
720,520 + GFF2992 0.68 +0.3
720,520 + GFF2992 0.68 +0.3
720,521 - GFF2992 0.68 -0.4
720,521 - GFF2992 0.68 -0.0
720,521 - GFF2992 0.68 +0.3
720,616 + GFF2992 0.73 -0.5
720,617 - GFF2992 0.73 -0.2
720,649 + GFF2992 0.75 -0.7
720,649 + GFF2992 0.75 -0.9
720,650 - GFF2992 0.75 +0.1
720,650 - GFF2992 0.75 +0.4
720,665 - GFF2992 0.76 -0.2
720,757 + GFF2992 0.80 +0.1
720,757 + GFF2992 0.80 +0.4
720,757 + GFF2992 0.80 +1.5
720,757 + GFF2992 0.80 +0.9
720,758 - GFF2992 0.80 +0.1
720,758 - GFF2992 0.80 -0.2
720,758 - GFF2992 0.80 -0.7
720,763 + GFF2992 0.81 +0.2
720,763 + GFF2992 0.81 -0.2
720,763 + GFF2992 0.81 -0.6
720,764 - GFF2992 0.81 +1.1
720,764 - GFF2992 0.81 +0.9
720,781 + GFF2992 0.82 +0.4
720,781 + GFF2992 0.82 -0.1
720,841 + GFF2992 0.85 +0.4
720,928 + GFF2992 0.89 -2.1
720,929 - GFF2992 0.89 +0.3
720,929 - GFF2992 0.89 +1.5
720,988 + +0.6
720,989 - +1.7
720,989 - +0.4
720,990 + +0.3
721,075 + +0.6
721,075 + -0.1
721,470 + GFF2993 0.31 -0.6
721,470 + GFF2993 0.31 -0.6
721,557 + GFF2993 0.41 -0.2
721,558 - GFF2993 0.41 +0.5
721,558 - GFF2993 0.41 -0.5
721,558 - GFF2993 0.41 -0.0
721,558 - GFF2993 0.41 -0.5
721,613 - GFF2993 0.47 +0.3

Or see this region's nucleotide sequence