Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2990 and GFF2991 are separated by 309 nucleotides GFF2991 and GFF2992 are separated by 634 nucleotides
GFF2990 - High-affinity branched-chain amino acid transport system permease protein LivH, at 716,106 to 717,005
GFF2990
GFF2991 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 717,315 to 718,535
GFF2991
GFF2992 - Vitamin B12 transporter BtuB, at 719,170 to 721,143
GFF2992
Position (kb) 717
718
719 Strain fitness (log2 ratio) -1
0
1 at 716.803 kb on + strand, within GFF2990 at 716.803 kb on + strand, within GFF2990 at 716.803 kb on + strand, within GFF2990 at 716.804 kb on - strand, within GFF2990 at 716.953 kb on + strand at 716.953 kb on + strand at 716.954 kb on - strand at 716.954 kb on - strand at 716.954 kb on - strand at 717.001 kb on + strand at 717.115 kb on + strand at 717.132 kb on + strand at 717.133 kb on - strand at 717.212 kb on + strand at 717.292 kb on + strand at 717.293 kb on - strand at 717.293 kb on - strand at 717.460 kb on + strand, within GFF2991 at 717.460 kb on + strand, within GFF2991 at 717.577 kb on + strand, within GFF2991 at 717.622 kb on + strand, within GFF2991 at 717.622 kb on + strand, within GFF2991 at 717.623 kb on - strand, within GFF2991 at 717.634 kb on + strand, within GFF2991 at 717.634 kb on + strand, within GFF2991 at 717.634 kb on + strand, within GFF2991 at 717.635 kb on - strand, within GFF2991 at 717.832 kb on + strand, within GFF2991 at 717.833 kb on - strand, within GFF2991 at 717.983 kb on - strand, within GFF2991 at 718.093 kb on + strand, within GFF2991 at 718.093 kb on + strand, within GFF2991 at 718.093 kb on + strand, within GFF2991 at 718.093 kb on + strand, within GFF2991 at 718.093 kb on + strand, within GFF2991 at 718.094 kb on - strand, within GFF2991 at 718.094 kb on - strand, within GFF2991 at 718.184 kb on - strand, within GFF2991 at 718.184 kb on - strand, within GFF2991 at 718.222 kb on + strand, within GFF2991 at 718.581 kb on - strand at 718.650 kb on + strand at 718.651 kb on - strand at 718.717 kb on + strand at 718.867 kb on + strand at 718.868 kb on - strand at 718.956 kb on + strand at 718.957 kb on - strand at 719.503 kb on + strand, within GFF2992
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 716,803 + GFF2990 0.77 +0.2 716,803 + GFF2990 0.77 +0.2 716,803 + GFF2990 0.77 +0.2 716,804 - GFF2990 0.78 -0.4 716,953 + -0.4 716,953 + -0.2 716,954 - -0.4 716,954 - -0.1 716,954 - +0.1 717,001 + -0.6 717,115 + -0.8 717,132 + -0.6 717,133 - -0.5 717,212 + -1.4 717,292 + +0.1 717,293 - +0.5 717,293 - +0.8 717,460 + GFF2991 0.12 +0.9 717,460 + GFF2991 0.12 -1.3 717,577 + GFF2991 0.21 -0.8 717,622 + GFF2991 0.25 +0.6 717,622 + GFF2991 0.25 +0.0 717,623 - GFF2991 0.25 -0.1 717,634 + GFF2991 0.26 +0.3 717,634 + GFF2991 0.26 +1.1 717,634 + GFF2991 0.26 -0.0 717,635 - GFF2991 0.26 -0.1 717,832 + GFF2991 0.42 +1.5 717,833 - GFF2991 0.42 +1.2 717,983 - GFF2991 0.55 -1.2 718,093 + GFF2991 0.64 -0.1 718,093 + GFF2991 0.64 +0.3 718,093 + GFF2991 0.64 -0.0 718,093 + GFF2991 0.64 -1.0 718,093 + GFF2991 0.64 +0.3 718,094 - GFF2991 0.64 +0.1 718,094 - GFF2991 0.64 +0.4 718,184 - GFF2991 0.71 -1.0 718,184 - GFF2991 0.71 -0.5 718,222 + GFF2991 0.74 -0.3 718,581 - +0.4 718,650 + -0.2 718,651 - -1.3 718,717 + +0.0 718,867 + +0.9 718,868 - +0.2 718,956 + +0.1 718,957 - +0.1 719,503 + GFF2992 0.17 +0.3
Or see this region's nucleotide sequence