Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2957 and GFF2958 overlap by 4 nucleotides GFF2958 and GFF2959 are separated by 12 nucleotides GFF2959 and GFF2960 are separated by 294 nucleotides
GFF2957 - Ureidoglycolate lyase, at 681,939 to 682,778
GFF2957
GFF2958 - hypothetical protein, at 682,775 to 683,551
GFF2958
GFF2959 - hypothetical protein, at 683,564 to 684,607
GFF2959
GFF2960 - Transcriptional repressor IclR, at 684,902 to 685,756
GFF2960
Position (kb) 683
684
685 Strain fitness (log2 ratio) -1
0
1 at 682.879 kb on - strand, within GFF2958 at 682.983 kb on + strand, within GFF2958 at 682.983 kb on + strand, within GFF2958 at 682.983 kb on + strand, within GFF2958 at 682.983 kb on + strand, within GFF2958 at 682.984 kb on - strand, within GFF2958 at 682.984 kb on - strand, within GFF2958 at 682.984 kb on - strand, within GFF2958 at 683.011 kb on - strand, within GFF2958 at 683.061 kb on + strand, within GFF2958 at 683.062 kb on - strand, within GFF2958 at 683.062 kb on - strand, within GFF2958 at 683.062 kb on - strand, within GFF2958 at 683.144 kb on - strand, within GFF2958 at 683.170 kb on - strand, within GFF2958 at 683.178 kb on + strand, within GFF2958 at 683.292 kb on + strand, within GFF2958 at 683.331 kb on + strand, within GFF2958 at 683.331 kb on + strand, within GFF2958 at 683.331 kb on + strand, within GFF2958 at 683.331 kb on + strand, within GFF2958 at 683.331 kb on + strand, within GFF2958 at 683.332 kb on - strand, within GFF2958 at 683.332 kb on - strand, within GFF2958 at 683.589 kb on + strand at 683.607 kb on + strand at 683.607 kb on + strand at 683.608 kb on - strand at 683.700 kb on + strand, within GFF2959 at 683.701 kb on - strand, within GFF2959 at 683.701 kb on - strand, within GFF2959 at 683.818 kb on + strand, within GFF2959 at 683.988 kb on + strand, within GFF2959 at 683.988 kb on + strand, within GFF2959 at 683.988 kb on + strand, within GFF2959 at 684.036 kb on + strand, within GFF2959 at 684.037 kb on - strand, within GFF2959 at 684.037 kb on - strand, within GFF2959 at 684.075 kb on + strand, within GFF2959 at 684.076 kb on - strand, within GFF2959 at 684.076 kb on - strand, within GFF2959 at 684.273 kb on + strand, within GFF2959 at 684.274 kb on - strand, within GFF2959 at 684.274 kb on - strand, within GFF2959 at 685.520 kb on + strand, within GFF2960 at 685.521 kb on - strand, within GFF2960
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 682,879 - GFF2958 0.13 +1.4 682,983 + GFF2958 0.27 -0.8 682,983 + GFF2958 0.27 -0.6 682,983 + GFF2958 0.27 +0.2 682,983 + GFF2958 0.27 -0.8 682,984 - GFF2958 0.27 +1.3 682,984 - GFF2958 0.27 -0.5 682,984 - GFF2958 0.27 +0.4 683,011 - GFF2958 0.30 +1.1 683,061 + GFF2958 0.37 -0.8 683,062 - GFF2958 0.37 -0.3 683,062 - GFF2958 0.37 +0.4 683,062 - GFF2958 0.37 +0.5 683,144 - GFF2958 0.47 -0.8 683,170 - GFF2958 0.51 +0.9 683,178 + GFF2958 0.52 -0.5 683,292 + GFF2958 0.67 +0.4 683,331 + GFF2958 0.72 -0.7 683,331 + GFF2958 0.72 -0.4 683,331 + GFF2958 0.72 +0.2 683,331 + GFF2958 0.72 +0.0 683,331 + GFF2958 0.72 +0.8 683,332 - GFF2958 0.72 +0.5 683,332 - GFF2958 0.72 -0.7 683,589 + -0.2 683,607 + -0.5 683,607 + -0.7 683,608 - -0.3 683,700 + GFF2959 0.13 -0.1 683,701 - GFF2959 0.13 +0.3 683,701 - GFF2959 0.13 -0.1 683,818 + GFF2959 0.24 +0.1 683,988 + GFF2959 0.41 +0.4 683,988 + GFF2959 0.41 -0.5 683,988 + GFF2959 0.41 +0.8 684,036 + GFF2959 0.45 +1.3 684,037 - GFF2959 0.45 -0.4 684,037 - GFF2959 0.45 -0.4 684,075 + GFF2959 0.49 +0.2 684,076 - GFF2959 0.49 +0.4 684,076 - GFF2959 0.49 +0.2 684,273 + GFF2959 0.68 -0.6 684,274 - GFF2959 0.68 +0.3 684,274 - GFF2959 0.68 +0.8 685,520 + GFF2960 0.72 +0.2 685,521 - GFF2960 0.72 +0.5
Or see this region's nucleotide sequence