Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2949 and GFF2950 are separated by 586 nucleotides GFF2950 and GFF2951 are separated by 69 nucleotides GFF2951 and GFF2952 are separated by 94 nucleotides
GFF2949 - 3-dehydroquinate synthase, at 673,904 to 675,694
GFF2949
GFF2950 - NADH dehydrogenase-like protein, at 676,281 to 677,504
GFF2950
GFF2951 - Toluene-4-monooxygenase system, ferredoxin component, at 677,574 to 677,912
GFF2951
GFF2952 - Thioredoxin 2, at 678,007 to 678,495
GFF2952
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1 at 675.793 kb on - strand at 676.005 kb on - strand at 676.361 kb on - strand at 676.447 kb on + strand, within GFF2950 at 676.448 kb on - strand, within GFF2950 at 676.487 kb on - strand, within GFF2950 at 676.648 kb on + strand, within GFF2950 at 676.854 kb on + strand, within GFF2950 at 677.111 kb on - strand, within GFF2950 at 677.195 kb on - strand, within GFF2950 at 677.195 kb on - strand, within GFF2950 at 677.195 kb on - strand, within GFF2950 at 677.529 kb on + strand at 677.529 kb on + strand at 677.530 kb on - strand at 677.530 kb on - strand at 677.530 kb on - strand at 677.530 kb on - strand at 677.647 kb on + strand, within GFF2951 at 677.647 kb on + strand, within GFF2951 at 677.648 kb on - strand, within GFF2951 at 678.041 kb on + strand at 678.041 kb on + strand at 678.042 kb on - strand at 678.120 kb on - strand, within GFF2952 at 678.146 kb on + strand, within GFF2952 at 678.294 kb on - strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.307 kb on - strand, within GFF2952 at 678.307 kb on - strand, within GFF2952 at 678.307 kb on - strand, within GFF2952 at 678.424 kb on - strand, within GFF2952 at 678.424 kb on - strand, within GFF2952
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 675,793 - +0.5 676,005 - -0.8 676,361 - +0.1 676,447 + GFF2950 0.14 +0.3 676,448 - GFF2950 0.14 -1.8 676,487 - GFF2950 0.17 -0.1 676,648 + GFF2950 0.30 -1.3 676,854 + GFF2950 0.47 -0.7 677,111 - GFF2950 0.68 -0.4 677,195 - GFF2950 0.75 +0.1 677,195 - GFF2950 0.75 +0.0 677,195 - GFF2950 0.75 +0.3 677,529 + +0.2 677,529 + +0.7 677,530 - +1.1 677,530 - -0.6 677,530 - +0.0 677,530 - +0.4 677,647 + GFF2951 0.22 -2.5 677,647 + GFF2951 0.22 +1.0 677,648 - GFF2951 0.22 +0.1 678,041 + -1.0 678,041 + +1.0 678,042 - -2.6 678,120 - GFF2952 0.23 -0.9 678,146 + GFF2952 0.28 -0.6 678,294 - GFF2952 0.59 +0.6 678,306 + GFF2952 0.61 -0.7 678,306 + GFF2952 0.61 +0.1 678,306 + GFF2952 0.61 +0.4 678,306 + GFF2952 0.61 -1.4 678,306 + GFF2952 0.61 +0.8 678,307 - GFF2952 0.61 -0.1 678,307 - GFF2952 0.61 +0.7 678,307 - GFF2952 0.61 +1.1 678,424 - GFF2952 0.85 -0.4 678,424 - GFF2952 0.85 +0.3
Or see this region's nucleotide sequence