Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2945 and GFF2946 are separated by 31 nucleotides GFF2946 and GFF2947 are separated by 36 nucleotides GFF2947 and GFF2948 are separated by 255 nucleotides
GFF2945 - protein kinase UbiB, at 667,420 to 668,766
GFF2945
GFF2946 - hypothetical protein, at 668,798 to 669,295
GFF2946
GFF2947 - D-aminopeptidase, at 669,332 to 670,927
GFF2947
GFF2948 - Sensor histidine kinase RcsC, at 671,183 to 673,495
GFF2948
Position (kb) 669
670
671 Strain fitness (log2 ratio) -1
0
1 at 668.334 kb on - strand, within GFF2945 at 668.787 kb on + strand at 668.787 kb on + strand at 668.787 kb on + strand at 668.788 kb on - strand at 668.788 kb on - strand at 668.788 kb on - strand at 668.827 kb on - strand at 668.877 kb on + strand, within GFF2946 at 669.177 kb on + strand, within GFF2946 at 669.178 kb on - strand, within GFF2946 at 669.561 kb on + strand, within GFF2947 at 669.573 kb on + strand, within GFF2947 at 669.573 kb on + strand, within GFF2947 at 669.585 kb on + strand, within GFF2947 at 669.586 kb on - strand, within GFF2947 at 669.657 kb on + strand, within GFF2947 at 669.681 kb on + strand, within GFF2947 at 669.691 kb on - strand, within GFF2947 at 669.909 kb on + strand, within GFF2947 at 669.910 kb on - strand, within GFF2947 at 669.910 kb on - strand, within GFF2947 at 669.910 kb on - strand, within GFF2947 at 669.936 kb on + strand, within GFF2947 at 670.219 kb on - strand, within GFF2947 at 670.219 kb on - strand, within GFF2947 at 670.305 kb on + strand, within GFF2947 at 670.306 kb on - strand, within GFF2947 at 670.311 kb on + strand, within GFF2947 at 670.312 kb on - strand, within GFF2947 at 670.312 kb on - strand, within GFF2947 at 670.431 kb on + strand, within GFF2947 at 670.976 kb on - strand at 670.981 kb on + strand at 671.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 668,334 - GFF2945 0.68 -0.3 668,787 + -0.6 668,787 + -0.2 668,787 + +1.1 668,788 - -0.2 668,788 - +0.4 668,788 - -0.3 668,827 - -0.3 668,877 + GFF2946 0.16 +0.3 669,177 + GFF2946 0.76 -1.6 669,178 - GFF2946 0.76 -0.1 669,561 + GFF2947 0.14 -0.0 669,573 + GFF2947 0.15 +0.5 669,573 + GFF2947 0.15 +0.2 669,585 + GFF2947 0.16 -0.2 669,586 - GFF2947 0.16 +0.8 669,657 + GFF2947 0.20 -1.2 669,681 + GFF2947 0.22 +0.5 669,691 - GFF2947 0.22 +0.7 669,909 + GFF2947 0.36 +1.5 669,910 - GFF2947 0.36 -0.1 669,910 - GFF2947 0.36 -1.0 669,910 - GFF2947 0.36 -0.4 669,936 + GFF2947 0.38 -0.1 670,219 - GFF2947 0.56 +0.1 670,219 - GFF2947 0.56 +0.3 670,305 + GFF2947 0.61 -1.4 670,306 - GFF2947 0.61 -1.7 670,311 + GFF2947 0.61 -0.0 670,312 - GFF2947 0.61 +1.5 670,312 - GFF2947 0.61 -0.1 670,431 + GFF2947 0.69 -0.3 670,976 - +0.1 670,981 + -1.0 671,141 + +0.1
Or see this region's nucleotide sequence