Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2943 and GFF2944 are separated by 59 nucleotides GFF2944 and GFF2945 are separated by 180 nucleotides GFF2945 and GFF2946 are separated by 31 nucleotides GFF2946 and GFF2947 are separated by 36 nucleotides
GFF2943 - hypothetical protein, at 665,999 to 666,466
GFF2943
GFF2944 - hypothetical protein, at 666,526 to 667,239
GFF2944
GFF2945 - protein kinase UbiB, at 667,420 to 668,766
GFF2945
GFF2946 - hypothetical protein, at 668,798 to 669,295
GFF2946
GFF2947 - D-aminopeptidase, at 669,332 to 670,927
GFF2947
Position (kb) 667
668
669 Strain fitness (log2 ratio) -1
0
1
2
3 at 666.494 kb on + strand at 666.494 kb on + strand at 666.494 kb on + strand at 666.495 kb on - strand at 666.495 kb on - strand at 666.495 kb on - strand at 666.742 kb on + strand, within GFF2944 at 666.742 kb on + strand, within GFF2944 at 666.820 kb on + strand, within GFF2944 at 666.821 kb on - strand, within GFF2944 at 666.821 kb on - strand, within GFF2944 at 666.821 kb on - strand, within GFF2944 at 666.821 kb on - strand, within GFF2944 at 666.871 kb on + strand, within GFF2944 at 666.871 kb on + strand, within GFF2944 at 666.872 kb on - strand, within GFF2944 at 666.961 kb on + strand, within GFF2944 at 666.961 kb on + strand, within GFF2944 at 667.422 kb on - strand at 667.422 kb on - strand at 667.652 kb on + strand, within GFF2945 at 667.653 kb on - strand, within GFF2945 at 667.712 kb on + strand, within GFF2945 at 667.713 kb on - strand, within GFF2945 at 667.713 kb on - strand, within GFF2945 at 667.883 kb on + strand, within GFF2945 at 667.883 kb on + strand, within GFF2945 at 667.935 kb on - strand, within GFF2945 at 667.935 kb on - strand, within GFF2945 at 667.935 kb on - strand, within GFF2945 at 668.162 kb on + strand, within GFF2945 at 668.162 kb on + strand, within GFF2945 at 668.162 kb on + strand, within GFF2945 at 668.163 kb on - strand, within GFF2945 at 668.163 kb on - strand, within GFF2945 at 668.334 kb on - strand, within GFF2945 at 668.787 kb on + strand at 668.787 kb on + strand at 668.787 kb on + strand at 668.788 kb on - strand at 668.788 kb on - strand at 668.788 kb on - strand at 668.827 kb on - strand at 668.877 kb on + strand, within GFF2946 at 669.177 kb on + strand, within GFF2946 at 669.178 kb on - strand, within GFF2946 at 669.561 kb on + strand, within GFF2947 at 669.573 kb on + strand, within GFF2947 at 669.573 kb on + strand, within GFF2947 at 669.585 kb on + strand, within GFF2947 at 669.586 kb on - strand, within GFF2947 at 669.657 kb on + strand, within GFF2947 at 669.681 kb on + strand, within GFF2947 at 669.691 kb on - strand, within GFF2947
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 666,494 + -0.4 666,494 + -0.3 666,494 + -0.2 666,495 - +1.3 666,495 - -1.1 666,495 - +0.1 666,742 + GFF2944 0.30 -0.1 666,742 + GFF2944 0.30 +0.3 666,820 + GFF2944 0.41 -0.2 666,821 - GFF2944 0.41 +0.2 666,821 - GFF2944 0.41 +0.3 666,821 - GFF2944 0.41 +0.5 666,821 - GFF2944 0.41 -0.5 666,871 + GFF2944 0.48 +2.8 666,871 + GFF2944 0.48 +0.2 666,872 - GFF2944 0.48 -0.1 666,961 + GFF2944 0.61 +0.2 666,961 + GFF2944 0.61 -1.0 667,422 - -0.8 667,422 - -0.3 667,652 + GFF2945 0.17 +0.3 667,653 - GFF2945 0.17 +1.6 667,712 + GFF2945 0.22 -1.0 667,713 - GFF2945 0.22 -0.1 667,713 - GFF2945 0.22 -1.2 667,883 + GFF2945 0.34 -0.7 667,883 + GFF2945 0.34 -1.3 667,935 - GFF2945 0.38 -1.3 667,935 - GFF2945 0.38 +0.4 667,935 - GFF2945 0.38 +0.4 668,162 + GFF2945 0.55 +0.4 668,162 + GFF2945 0.55 -0.5 668,162 + GFF2945 0.55 -0.8 668,163 - GFF2945 0.55 +0.6 668,163 - GFF2945 0.55 -0.2 668,334 - GFF2945 0.68 -0.3 668,787 + -0.6 668,787 + -0.2 668,787 + +1.1 668,788 - -0.2 668,788 - +0.4 668,788 - -0.3 668,827 - -0.3 668,877 + GFF2946 0.16 +0.3 669,177 + GFF2946 0.76 -1.6 669,178 - GFF2946 0.76 -0.1 669,561 + GFF2947 0.14 -0.0 669,573 + GFF2947 0.15 +0.5 669,573 + GFF2947 0.15 +0.2 669,585 + GFF2947 0.16 -0.2 669,586 - GFF2947 0.16 +0.8 669,657 + GFF2947 0.20 -1.2 669,681 + GFF2947 0.22 +0.5 669,691 - GFF2947 0.22 +0.7
Or see this region's nucleotide sequence