Strain Fitness in Xanthobacter sp. DMC5 around GFF291

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF289 and GFF290 are separated by 49 nucleotidesGFF290 and GFF291 are separated by 73 nucleotidesGFF291 and GFF292 are separated by 79 nucleotides GFF289 - hypothetical protein, at 304,786 to 305,229 GFF289 GFF290 - hypothetical protein, at 305,279 to 305,764 GFF290 GFF291 - Glutamine synthetase, at 305,838 to 307,193 GFF291 GFF292 - Isopentenyl-diphosphate delta-isomerase, at 307,273 to 308,610 GFF292 Position (kb) 305 306 307 308Strain fitness (log2 ratio) -2 -1 0 1 2at 304.960 kb on + strand, within GFF289at 304.960 kb on + strand, within GFF289at 304.960 kb on + strand, within GFF289at 304.960 kb on + strand, within GFF289at 304.960 kb on + strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 304.961 kb on - strand, within GFF289at 305.041 kb on + strand, within GFF289at 305.041 kb on + strand, within GFF289at 305.041 kb on + strand, within GFF289at 305.041 kb on + strand, within GFF289at 305.042 kb on - strand, within GFF289at 305.042 kb on - strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.182 kb on + strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.183 kb on - strand, within GFF289at 305.579 kb on + strand, within GFF290at 305.579 kb on + strand, within GFF290at 305.580 kb on - strand, within GFF290at 305.580 kb on - strand, within GFF290at 305.580 kb on - strand, within GFF290at 305.580 kb on - strand, within GFF290at 305.580 kb on - strand, within GFF290at 305.707 kb on + strand, within GFF290at 305.721 kb on - strandat 305.920 kb on + strandat 305.920 kb on + strandat 306.043 kb on + strand, within GFF291at 306.043 kb on + strand, within GFF291at 306.043 kb on + strand, within GFF291at 306.044 kb on - strand, within GFF291at 306.044 kb on - strand, within GFF291at 306.130 kb on + strand, within GFF291at 306.165 kb on - strand, within GFF291at 306.217 kb on + strand, within GFF291at 306.217 kb on + strand, within GFF291at 306.217 kb on + strand, within GFF291at 306.217 kb on + strand, within GFF291at 306.218 kb on - strand, within GFF291at 306.218 kb on - strand, within GFF291at 306.218 kb on - strand, within GFF291at 306.218 kb on - strand, within GFF291at 306.221 kb on + strand, within GFF291at 306.222 kb on - strand, within GFF291at 306.280 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.423 kb on + strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.424 kb on - strand, within GFF291at 306.520 kb on + strand, within GFF291at 306.521 kb on - strand, within GFF291at 306.565 kb on + strand, within GFF291at 306.566 kb on - strand, within GFF291at 306.697 kb on + strand, within GFF291at 306.698 kb on - strand, within GFF291at 306.763 kb on + strand, within GFF291at 306.764 kb on - strand, within GFF291at 306.793 kb on + strand, within GFF291at 306.871 kb on + strand, within GFF291at 306.872 kb on - strand, within GFF291at 306.872 kb on - strand, within GFF291at 306.872 kb on - strand, within GFF291at 306.872 kb on - strand, within GFF291at 307.078 kb on + strandat 307.078 kb on + strandat 307.079 kb on - strandat 307.094 kb on - strandat 307.263 kb on + strandat 307.263 kb on + strandat 307.264 kb on - strandat 307.277 kb on + strandat 307.445 kb on + strand, within GFF292at 307.445 kb on + strand, within GFF292at 307.445 kb on + strand, within GFF292at 307.445 kb on + strand, within GFF292at 307.580 kb on + strand, within GFF292at 307.889 kb on + strand, within GFF292at 307.889 kb on + strand, within GFF292at 307.890 kb on - strand, within GFF292at 307.893 kb on - strand, within GFF292at 307.919 kb on + strand, within GFF292at 307.919 kb on + strand, within GFF292at 307.919 kb on + strand, within GFF292at 308.168 kb on + strand, within GFF292at 308.168 kb on + strand, within GFF292at 308.168 kb on + strand, within GFF292at 308.169 kb on - strand, within GFF292at 308.190 kb on - strand, within GFF292

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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304,960 + GFF289 0.39 -0.8
304,960 + GFF289 0.39 -0.4
304,960 + GFF289 0.39 -0.1
304,960 + GFF289 0.39 -1.0
304,960 + GFF289 0.39 -1.5
304,961 - GFF289 0.39 +0.2
304,961 - GFF289 0.39 -0.5
304,961 - GFF289 0.39 -0.5
304,961 - GFF289 0.39 +0.2
304,961 - GFF289 0.39 +0.1
304,961 - GFF289 0.39 -0.3
304,961 - GFF289 0.39 -0.2
304,961 - GFF289 0.39 -0.4
304,961 - GFF289 0.39 +1.0
304,961 - GFF289 0.39 -0.2
304,961 - GFF289 0.39 +0.9
304,961 - GFF289 0.39 +1.2
305,041 + GFF289 0.57 +1.9
305,041 + GFF289 0.57 -0.8
305,041 + GFF289 0.57 +1.2
305,041 + GFF289 0.57 +0.3
305,042 - GFF289 0.58 -0.3
305,042 - GFF289 0.58 +0.0
305,182 + GFF289 0.89 -2.0
305,182 + GFF289 0.89 -0.8
305,182 + GFF289 0.89 -0.4
305,182 + GFF289 0.89 -0.3
305,182 + GFF289 0.89 +1.5
305,182 + GFF289 0.89 +0.1
305,182 + GFF289 0.89 -0.8
305,182 + GFF289 0.89 -0.1
305,182 + GFF289 0.89 -0.4
305,183 - GFF289 0.89 +0.1
305,183 - GFF289 0.89 -0.1
305,183 - GFF289 0.89 -0.7
305,183 - GFF289 0.89 -1.3
305,183 - GFF289 0.89 -0.0
305,183 - GFF289 0.89 -0.3
305,183 - GFF289 0.89 +0.5
305,183 - GFF289 0.89 -0.1
305,183 - GFF289 0.89 -0.3
305,183 - GFF289 0.89 +0.7
305,579 + GFF290 0.62 -1.7
305,579 + GFF290 0.62 -0.4
305,580 - GFF290 0.62 -0.4
305,580 - GFF290 0.62 -0.2
305,580 - GFF290 0.62 -0.3
305,580 - GFF290 0.62 -1.2
305,580 - GFF290 0.62 +1.0
305,707 + GFF290 0.88 +0.4
305,721 - -1.1
305,920 + +0.5
305,920 + -0.4
306,043 + GFF291 0.15 +0.5
306,043 + GFF291 0.15 -0.1
306,043 + GFF291 0.15 +0.5
306,044 - GFF291 0.15 +0.5
306,044 - GFF291 0.15 -1.9
306,130 + GFF291 0.22 +0.1
306,165 - GFF291 0.24 -0.7
306,217 + GFF291 0.28 -0.4
306,217 + GFF291 0.28 +0.3
306,217 + GFF291 0.28 +0.3
306,217 + GFF291 0.28 +0.2
306,218 - GFF291 0.28 -0.7
306,218 - GFF291 0.28 +0.8
306,218 - GFF291 0.28 -0.5
306,218 - GFF291 0.28 +0.1
306,221 + GFF291 0.28 +0.8
306,222 - GFF291 0.28 +0.2
306,280 + GFF291 0.33 +1.0
306,423 + GFF291 0.43 -0.1
306,423 + GFF291 0.43 -1.0
306,423 + GFF291 0.43 -0.4
306,423 + GFF291 0.43 -0.4
306,423 + GFF291 0.43 +0.3
306,423 + GFF291 0.43 -0.2
306,423 + GFF291 0.43 +0.3
306,424 - GFF291 0.43 +1.1
306,424 - GFF291 0.43 +0.4
306,424 - GFF291 0.43 +0.0
306,424 - GFF291 0.43 -0.0
306,424 - GFF291 0.43 +0.2
306,424 - GFF291 0.43 -0.2
306,520 + GFF291 0.50 -0.0
306,521 - GFF291 0.50 -1.0
306,565 + GFF291 0.54 +0.7
306,566 - GFF291 0.54 +0.2
306,697 + GFF291 0.63 -0.0
306,698 - GFF291 0.63 -0.1
306,763 + GFF291 0.68 +0.2
306,764 - GFF291 0.68 -0.5
306,793 + GFF291 0.70 +1.3
306,871 + GFF291 0.76 -0.1
306,872 - GFF291 0.76 -1.2
306,872 - GFF291 0.76 +0.7
306,872 - GFF291 0.76 -0.8
306,872 - GFF291 0.76 +0.2
307,078 + -0.5
307,078 + -0.1
307,079 - +0.4
307,094 - -0.0
307,263 + -0.1
307,263 + +0.3
307,264 - -0.4
307,277 + -0.2
307,445 + GFF292 0.13 +0.7
307,445 + GFF292 0.13 +0.4
307,445 + GFF292 0.13 +0.4
307,445 + GFF292 0.13 -1.0
307,580 + GFF292 0.23 -0.2
307,889 + GFF292 0.46 -0.5
307,889 + GFF292 0.46 +0.2
307,890 - GFF292 0.46 -1.1
307,893 - GFF292 0.46 +0.2
307,919 + GFF292 0.48 +0.8
307,919 + GFF292 0.48 +1.5
307,919 + GFF292 0.48 +0.1
308,168 + GFF292 0.67 +0.5
308,168 + GFF292 0.67 -0.7
308,168 + GFF292 0.67 +0.5
308,169 - GFF292 0.67 -1.3
308,190 - GFF292 0.69 -0.8

Or see this region's nucleotide sequence