Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2897 and GFF2898 are separated by 145 nucleotides GFF2898 and GFF2899 are separated by 48 nucleotides GFF2899 and GFF2900 are separated by 68 nucleotides GFF2900 and GFF2901 are separated by 15 nucleotides
GFF2897 - Deacetylase, at 612,439 to 613,716
GFF2897
GFF2898 - hypothetical protein, at 613,862 to 614,374
GFF2898
GFF2899 - Cardiolipin synthase A, at 614,423 to 615,868
GFF2899
GFF2900 - 3-keto-5-aminohexanoate cleavage enzyme, at 615,937 to 616,785
GFF2900
GFF2901 - C4-dicarboxylate transport transcriptional regulatory protein DctD, at 616,801 to 618,174
GFF2901
Position (kb) 614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 613.500 kb on - strand, within GFF2897 at 613.500 kb on - strand, within GFF2897 at 613.505 kb on + strand, within GFF2897 at 613.506 kb on - strand, within GFF2897 at 613.506 kb on - strand, within GFF2897 at 613.506 kb on - strand, within GFF2897 at 613.506 kb on - strand, within GFF2897 at 613.506 kb on - strand, within GFF2897 at 613.506 kb on - strand, within GFF2897 at 613.509 kb on + strand, within GFF2897 at 613.510 kb on - strand, within GFF2897 at 613.510 kb on - strand, within GFF2897 at 613.640 kb on - strand at 613.697 kb on + strand at 613.697 kb on + strand at 614.167 kb on + strand, within GFF2898 at 614.424 kb on + strand at 614.425 kb on - strand at 614.425 kb on - strand at 614.481 kb on + strand at 614.482 kb on - strand at 614.571 kb on + strand, within GFF2899 at 614.571 kb on + strand, within GFF2899 at 614.572 kb on - strand, within GFF2899 at 614.633 kb on + strand, within GFF2899 at 614.634 kb on - strand, within GFF2899 at 614.634 kb on - strand, within GFF2899 at 614.634 kb on - strand, within GFF2899 at 614.634 kb on - strand, within GFF2899 at 614.691 kb on + strand, within GFF2899 at 614.691 kb on + strand, within GFF2899 at 614.691 kb on + strand, within GFF2899 at 614.692 kb on - strand, within GFF2899 at 614.731 kb on - strand, within GFF2899 at 614.733 kb on + strand, within GFF2899 at 614.733 kb on + strand, within GFF2899 at 614.733 kb on + strand, within GFF2899 at 614.734 kb on - strand, within GFF2899 at 614.854 kb on - strand, within GFF2899 at 614.854 kb on - strand, within GFF2899 at 614.854 kb on - strand, within GFF2899 at 614.854 kb on - strand, within GFF2899 at 614.856 kb on + strand, within GFF2899 at 614.856 kb on + strand, within GFF2899 at 614.856 kb on + strand, within GFF2899 at 614.856 kb on + strand, within GFF2899 at 614.856 kb on + strand, within GFF2899 at 614.856 kb on + strand, within GFF2899 at 614.856 kb on + strand, within GFF2899 at 614.857 kb on - strand, within GFF2899 at 614.857 kb on - strand, within GFF2899 at 614.857 kb on - strand, within GFF2899 at 614.857 kb on - strand, within GFF2899 at 614.857 kb on - strand, within GFF2899 at 614.857 kb on - strand, within GFF2899 at 614.929 kb on - strand, within GFF2899 at 615.165 kb on + strand, within GFF2899 at 615.166 kb on - strand, within GFF2899 at 615.429 kb on + strand, within GFF2899 at 615.429 kb on + strand, within GFF2899 at 615.429 kb on + strand, within GFF2899 at 615.429 kb on + strand, within GFF2899 at 615.429 kb on + strand, within GFF2899 at 615.430 kb on - strand, within GFF2899 at 615.705 kb on + strand, within GFF2899 at 615.706 kb on - strand, within GFF2899 at 615.834 kb on + strand at 615.906 kb on + strand at 615.907 kb on - strand at 615.907 kb on - strand at 615.947 kb on + strand at 615.948 kb on - strand at 616.302 kb on - strand, within GFF2900 at 616.325 kb on + strand, within GFF2900 at 616.326 kb on - strand, within GFF2900 at 616.484 kb on + strand, within GFF2900 at 616.485 kb on - strand, within GFF2900 at 616.485 kb on - strand, within GFF2900 at 616.485 kb on - strand, within GFF2900 at 616.485 kb on - strand, within GFF2900 at 616.566 kb on - strand, within GFF2900 at 616.566 kb on - strand, within GFF2900 at 616.614 kb on + strand, within GFF2900
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 613,500 - GFF2897 0.83 -3.0 613,500 - GFF2897 0.83 -1.5 613,505 + GFF2897 0.83 +0.6 613,506 - GFF2897 0.83 +0.8 613,506 - GFF2897 0.83 -0.8 613,506 - GFF2897 0.83 -0.2 613,506 - GFF2897 0.83 -0.0 613,506 - GFF2897 0.83 +0.0 613,506 - GFF2897 0.83 +1.1 613,509 + GFF2897 0.84 +0.5 613,510 - GFF2897 0.84 +0.3 613,510 - GFF2897 0.84 -0.8 613,640 - -0.5 613,697 + -0.4 613,697 + -0.3 614,167 + GFF2898 0.59 +0.6 614,424 + +0.5 614,425 - +0.6 614,425 - -0.9 614,481 + +0.2 614,482 - +0.7 614,571 + GFF2899 0.10 -0.6 614,571 + GFF2899 0.10 +0.1 614,572 - GFF2899 0.10 +0.5 614,633 + GFF2899 0.15 -0.5 614,634 - GFF2899 0.15 -0.2 614,634 - GFF2899 0.15 +0.2 614,634 - GFF2899 0.15 +0.3 614,634 - GFF2899 0.15 +0.5 614,691 + GFF2899 0.19 -1.2 614,691 + GFF2899 0.19 -0.2 614,691 + GFF2899 0.19 +0.7 614,692 - GFF2899 0.19 -0.6 614,731 - GFF2899 0.21 +1.4 614,733 + GFF2899 0.21 +0.0 614,733 + GFF2899 0.21 -0.5 614,733 + GFF2899 0.21 -1.0 614,734 - GFF2899 0.22 -0.3 614,854 - GFF2899 0.30 +0.3 614,854 - GFF2899 0.30 +0.1 614,854 - GFF2899 0.30 +0.0 614,854 - GFF2899 0.30 -0.0 614,856 + GFF2899 0.30 -0.3 614,856 + GFF2899 0.30 +0.3 614,856 + GFF2899 0.30 +0.6 614,856 + GFF2899 0.30 +0.2 614,856 + GFF2899 0.30 -0.5 614,856 + GFF2899 0.30 +0.2 614,856 + GFF2899 0.30 +0.5 614,857 - GFF2899 0.30 -0.1 614,857 - GFF2899 0.30 +0.7 614,857 - GFF2899 0.30 +1.1 614,857 - GFF2899 0.30 -0.2 614,857 - GFF2899 0.30 +0.9 614,857 - GFF2899 0.30 -0.1 614,929 - GFF2899 0.35 +1.0 615,165 + GFF2899 0.51 -3.2 615,166 - GFF2899 0.51 +0.0 615,429 + GFF2899 0.70 -0.1 615,429 + GFF2899 0.70 -0.1 615,429 + GFF2899 0.70 +0.2 615,429 + GFF2899 0.70 -0.1 615,429 + GFF2899 0.70 -0.6 615,430 - GFF2899 0.70 -1.4 615,705 + GFF2899 0.89 -0.3 615,706 - GFF2899 0.89 -1.1 615,834 + -1.1 615,906 + +0.6 615,907 - +0.9 615,907 - +0.6 615,947 + -0.2 615,948 - -0.7 616,302 - GFF2900 0.43 +0.1 616,325 + GFF2900 0.46 +0.3 616,326 - GFF2900 0.46 +0.5 616,484 + GFF2900 0.64 -0.4 616,485 - GFF2900 0.65 +0.3 616,485 - GFF2900 0.65 -0.4 616,485 - GFF2900 0.65 +0.4 616,485 - GFF2900 0.65 +0.3 616,566 - GFF2900 0.74 +0.8 616,566 - GFF2900 0.74 +0.1 616,614 + GFF2900 0.80 +0.3
Or see this region's nucleotide sequence