Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2874 and GFF2875 are separated by 29 nucleotides GFF2875 and GFF2876 are separated by 240 nucleotides GFF2876 and GFF2877 are separated by 53 nucleotides
GFF2874 - Hydrogen peroxide-inducible genes activator, at 591,383 to 592,318
GFF2874
GFF2875 - Muconate cycloisomerase 1, at 592,348 to 593,514
GFF2875
GFF2876 - hypothetical protein, at 593,755 to 594,189
GFF2876
GFF2877 - Oxalate:formate antiporter, at 594,243 to 595,544
GFF2877
Position (kb) 592
593
594 Strain fitness (log2 ratio) -2
-1
0
1 at 591.357 kb on + strand at 591.460 kb on + strand at 591.460 kb on + strand at 591.460 kb on + strand at 591.461 kb on - strand at 591.461 kb on - strand at 591.549 kb on - strand, within GFF2874 at 591.568 kb on + strand, within GFF2874 at 591.755 kb on + strand, within GFF2874 at 591.788 kb on + strand, within GFF2874 at 591.788 kb on + strand, within GFF2874 at 591.788 kb on + strand, within GFF2874 at 591.789 kb on - strand, within GFF2874 at 591.789 kb on - strand, within GFF2874 at 592.128 kb on - strand, within GFF2874 at 592.128 kb on - strand, within GFF2874 at 592.371 kb on - strand at 592.481 kb on + strand, within GFF2875 at 592.481 kb on + strand, within GFF2875 at 592.482 kb on - strand, within GFF2875 at 592.482 kb on - strand, within GFF2875 at 592.482 kb on - strand, within GFF2875 at 592.482 kb on - strand, within GFF2875 at 592.814 kb on + strand, within GFF2875 at 593.172 kb on + strand, within GFF2875 at 593.173 kb on - strand, within GFF2875 at 593.180 kb on + strand, within GFF2875 at 593.251 kb on + strand, within GFF2875 at 593.251 kb on + strand, within GFF2875 at 593.252 kb on - strand, within GFF2875 at 593.252 kb on - strand, within GFF2875 at 593.400 kb on - strand at 593.507 kb on + strand at 593.507 kb on + strand at 593.508 kb on - strand at 593.508 kb on - strand at 593.545 kb on - strand at 593.582 kb on - strand at 593.643 kb on - strand at 593.678 kb on + strand at 594.103 kb on + strand, within GFF2876 at 594.103 kb on + strand, within GFF2876 at 594.103 kb on + strand, within GFF2876 at 594.103 kb on + strand, within GFF2876 at 594.103 kb on + strand, within GFF2876 at 594.104 kb on - strand, within GFF2876 at 594.104 kb on - strand, within GFF2876 at 594.240 kb on + strand at 594.240 kb on + strand at 594.301 kb on - strand at 594.322 kb on - strand at 594.359 kb on + strand at 594.382 kb on - strand, within GFF2877 at 594.420 kb on + strand, within GFF2877 at 594.420 kb on + strand, within GFF2877 at 594.464 kb on + strand, within GFF2877 at 594.465 kb on - strand, within GFF2877
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 591,357 + +0.1 591,460 + -0.0 591,460 + +0.5 591,460 + -0.9 591,461 - -1.1 591,461 - +0.1 591,549 - GFF2874 0.18 -0.9 591,568 + GFF2874 0.20 -0.3 591,755 + GFF2874 0.40 -0.9 591,788 + GFF2874 0.43 -1.3 591,788 + GFF2874 0.43 -0.5 591,788 + GFF2874 0.43 -0.3 591,789 - GFF2874 0.43 +0.7 591,789 - GFF2874 0.43 -0.6 592,128 - GFF2874 0.80 +0.5 592,128 - GFF2874 0.80 +0.0 592,371 - -0.5 592,481 + GFF2875 0.11 -0.7 592,481 + GFF2875 0.11 +0.3 592,482 - GFF2875 0.11 -0.1 592,482 - GFF2875 0.11 -0.7 592,482 - GFF2875 0.11 +0.0 592,482 - GFF2875 0.11 -1.0 592,814 + GFF2875 0.40 +0.2 593,172 + GFF2875 0.71 -0.6 593,173 - GFF2875 0.71 -0.4 593,180 + GFF2875 0.71 +0.5 593,251 + GFF2875 0.77 +1.6 593,251 + GFF2875 0.77 +0.6 593,252 - GFF2875 0.77 +0.2 593,252 - GFF2875 0.77 -0.0 593,400 - -0.5 593,507 + -0.3 593,507 + +0.3 593,508 - -0.7 593,508 - -0.4 593,545 - +0.8 593,582 - +0.6 593,643 - -2.5 593,678 + -0.2 594,103 + GFF2876 0.80 -2.0 594,103 + GFF2876 0.80 -0.2 594,103 + GFF2876 0.80 -1.0 594,103 + GFF2876 0.80 +0.2 594,103 + GFF2876 0.80 -0.9 594,104 - GFF2876 0.80 +1.0 594,104 - GFF2876 0.80 +0.4 594,240 + -0.3 594,240 + -0.2 594,301 - +1.5 594,322 - -0.8 594,359 + -0.6 594,382 - GFF2877 0.11 -0.5 594,420 + GFF2877 0.14 -0.5 594,420 + GFF2877 0.14 -0.1 594,464 + GFF2877 0.17 -0.2 594,465 - GFF2877 0.17 +0.8
Or see this region's nucleotide sequence